Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTGGTAATTGATGGAAAGCTTCAGAGTGCAGAGACAGATGAATTTATCTACCATGAATGTCTTGTTCATCCGGCTCTGCTTCACAATCCTAGgtacctcatttggactcttaacaataaaaaaaaatatgttgagatgtagataacatttttaattattattttttcattatcttttgtatgccatgttttag

Basic information

species Glycine max
transcript GLYMA10G39440.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G39440.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv05s0020g03200.t01 (Vitis vinifera), 5'ss of exon 3
GCTTTGGTAATTGATGGAAAGCTTCAGAGTGCAGAGACAGATGAATTTATCTACCATGAATGTCTTGTTCATCCGGCTCTGCTTCACAATCCTAGgtacctcatttggactcttaacaataaaaaaaaata-tgttgagatgtagataacatttttaattattattttttcatta---tcttttgtatgcca--tgttttag-------------
||||| || ||||||||||||||||| ||||| ||||  |||||||| |||||||||||||  ||||| ||||| || || |||||  |||| | |||| || |||   ||  || | ||      |     ||   |    || ||  ||||| |  |||| ||  | |  | |   |  |   || ||      |||| |             
GCTTTAGTCATTGATGGAAAGCTTCAAAGTGCTGAGATTGATGAATTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAAgtacttctttttctcttctatcgatggtttgagcggctgagaaagcttaaatcccatttctttttatcatactatggtgaagattctccataagctgatcatttttgtatgcattttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192331927|gb|FK026711.1|FK026711
EST:     TTTATCTACCATGAATGTCTTGTTCATCCGGCTCTGCTTCACAATCCTAG                         CCCAAAGAATGTTTTTATTATGGGAGGAGGAGAAGGCTCTACTGCAAGAGA
genomic: TTTATCTACCATGAATGTCTTGTTCATCCGGCTCTGCTTCACAATCCTAGgtacctcatt ... catgttttagCCCAAAGAATGTTTTTATTATGGGAGGAGGAGAAGGCTCTACTGCAAGAGA
EST: gi|151411311|gb|EV281122.1|EV281122
EST:     TTTATCTATCATGAATGTCTTGTTCATCCGGCTCTGCTTCACAATCCTAG                         CCCAAAGAATGTTTTTATTATGGGAGGAGGAGAAGGCTCTACTGCAAGAGA
genomic: TTTATCTACCATGAATGTCTTGTTCATCCGGCTCTGCTTCACAATCCTAGgtacctcatt ... catgttttagCCCAAAGAATGTTTTTATTATGGGAGGAGGAGAAGGCTCTACTGCAAGAGA