1 5' 3' | 2 5' 3' | 3 5' 3' |
TTTGTCTGGGGAACTGATGCTGATGGAAATCTCGTTTTCTCAGATGAGACAGAGATCGTAACTAAGAGCTGTGGGAAATCTTACGCACCATTCCCCAAAGgtaataataagacttgtggtcactgtataagacccctctgtttcactcctttaaaaattgtacaactatattaaaatttaaaagtaagttaagttgaaga...
species | Glycine max |
transcript | GLYMA10G38840.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTACGCACCATTCCCCAAAG GATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTGAEST: gi|192295822|gb|FG990874.1|FG990874
genomic: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTACGCACCATTCCCCAAAGgtaataataa ... ccatgttcagGATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTGA
EST: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTACGCACCATTCCCCAAAG GATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTGAEST: gi|7283825|gb|AW596427.1|AW596427
genomic: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTACGCACCATTCCCCAAAGgtaataataa ... ccatgttcagGATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTGA
EST: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTACGCACCATTCCCCAAAG GATTTGTCTGTGCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCAEST: gi|192333019|gb|FK024668.1|FK024668
genomic: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTACGCACCATTCCCCAAAGgtaataataa ... ccatgttcagGATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCA
EST: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTACGCACCATTCCCCAAAG GATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTGAEST: gi|23726996|gb|BU761512.1|BU761512
genomic: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTACGCACCATTCCCCAAAGgtaataataa ... ccatgttcagGATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTGA
EST: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTACGCACCATTCCCCAAAG GATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTGAEST: gi|213592774|gb|DB981292.1|DB981292
genomic: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTACGCACCATTCCCCAAAGgtaataataa ... ccatgttcagGATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTGA
EST: GAGATCGTAACTAAGAGCTGTGGGAGAA-ATTACGCAAGATTCCCCAAAG GATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTGAEST: gi|254343155|gb|GR859317.1|GR859317
genomic: GAGATCGTAACTAAGAGCTGTGGGA-AATCTTACGCACCATTCCCCAAAGgtaataataa ... ccatgttcagGATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTGA
EST: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTACGCACCATTCCCCAAAG GATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTGAEST: gi|208114336|gb|GD908909.1|GD908909
genomic: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTACGCACCATTCCCCAAAGgtaataataa ... ccatgttcagGATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTGA
EST: ATCGTAACTAAGAGCTGTGGGAAATCTTACGCACCATTCCCCAAAG GATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTGAEST: gi|254320535|gb|GR826984.1|GR826984
genomic: ATCGTAACTAAGAGCTGTGGGAAATCTTACGCACCATTCCCCAAAGgtaataataa ... ccatgttcagGATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTGA
EST: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTACGCACCATTCCCCAAAG GATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTGAEST: gi|6667998|gb|AW279449.1|AW279449
genomic: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTACGCACCATTCCCCAAAGgtaataataa ... ccatgttcagGATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTGA
EST: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTACGCACCATTCCCCAAAG GATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTGAEST: gi|254326313|gb|GR840905.1|GR840905
genomic: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTACGCACCATTCCCCAAAGgtaataataa ... ccatgttcagGATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTGA
EST: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTACGCACCATTCCCCAAAG GATTTTTCTTTTCAACATCCGGAG-TTTGAGCAGTTTTGAGCATCCACTGAEST: gi|5606908|gb|AI901006.1|AI901006
genomic: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTACGCACCATTCCCCAAAGgtaataataa ... ccatgttcagGATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTGA
EST: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTACGCACCATTCCCCAAAG GATTNNTCTTTTCAACATCCEST: gi|254320536|gb|GR826985.1|GR826985
genomic: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTACGCACCATTCCCCAAAGgtaataataa ... ccatgttcagGATTTTTCTTTTCAACATCC
EST: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTACGCACCATTCCCCAAAG GATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTGA
genomic: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTACGCACCATTCCCCAAAGgtaataataa ... ccatgttcagGATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGTCTGGGGAACTGATGCTGATGGAAATCTCGTTTTCTCAGATGAGACAGAGATCGTAACTAAGAGCTGTGGGAAATCTTACGCACCATTCCCCAAAGgtaataataagacttgtggtcactgtataagacccctctgtttcactcctttaaaaattgtacaactatattaaaatttaaaagtaagttaagttgaaga
- - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagtaa