1 5' 3' | 2 5' 3' | 3 5' 3' |
GCCCAAAAATGATTCCAGCAATCCCTCAGTTTCATCTGTTGATCCTTTAGTTGGAGGAGAAACAGTGTTTTATGGTCAAAGAAACAAAACTGTGGCTGAGgtaaactatttattttcttctagtgaagtatgggttggtaatatttcctttacacttcaattgagtgtgaatttttgcttaatgcaaattttggaatgtatgctttgggtgttgataatacaatattgattttacag
species | Glycine max |
transcript | GLYMA10G38530.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGGAGGAGAAACAGTGTTTTATGGTCAAAGAAACAAAACTGTGGCTGAG GTGGCTTCTACTGAAGGGACAGCCCTACTGCACCTTCATGGAGATAAATGTEST: gi|192331818|gb|FK024922.1|FK024922
genomic: TTGGAGGAGAAACAGTGTTTTATGGTCAAAGAAACAAAACTGTGGCTGAGgtaaactatt ... gattttacagGTGGCTCCTACTGAAGGGACAGCCCTACTGCACCTTCATGGAGATAAATGT
EST: TTGGAGGAGAAACAGTGTTTTATGGTCAAAGAAACAAAACTGTGGCTGAG -TGGCTCCTACTGAAAGGACAGCCCTACTGCACCTTCATGGAGATAAATGTEST: gi|192330574|gb|FK022705.1|FK022705
genomic: TTGGAGGAGAAACAGTGTTTTATGGTCAAAGAAACAAAACTGTGGCTGAGgtaaactatt ... gattttacagGTGGCTCCTACTGAAGGGACAGCCCTACTGCACCTTCATGGAGATAAATGT
EST: TTGGAGGAGAAACAGTGTTTTATGGTCAAAGAAACAAAACTGTGGCTGAG GTGGCTCCTACTGAAGGGACAGCCCTACTGCACCTTCATGGAGATAAATGTEST: gi|192331819|gb|FK024923.1|FK024923
genomic: TTGGAGGAGAAACAGTGTTTTATGGTCAAAGAAACAAAACTGTGGCTGAGgtaaactatt ... gattttacagGTGGCTCCTACTGAAGGGACAGCCCTACTGCACCTTCATGGAGATAAATGT
EST: TTGGAGGAGAAACAGTGTTTTATGGTCAAAGAAACAAAACTGTGGCTGAG GTGGCTCCTACTGAAGGGACAGCCCTACTGCACCTTCATGGAGATAAATGTEST: gi|151404381|gb|EV274191.1|EV274191
genomic: TTGGAGGAGAAACAGTGTTTTATGGTCAAAGAAACAAAACTGTGGCTGAGgtaaactatt ... gattttacagGTGGCTCCTACTGAAGGGACAGCCCTACTGCACCTTCATGGAGATAAATGT
EST: TTGGAGGAGAAACAGTGTTTTATGGTCAAAGAAACAAAACTGTGGCTGAG GTGGCTCCTACTGAAGGGACAGCCCTACTGCACCTTCATGGAGATAAATGTEST: gi|31311667|gb|CD396870.1|CD396870
genomic: TTGGAGGAGAAACAGTGTTTTATGGTCAAAGAAACAAAACTGTGGCTGAGgtaaactatt ... gattttacagGTGGCTCCTACTGAAGGGACAGCCCTACTGCACCTTCATGGAGATAAATGT
EST: TTGGAGGAGAAACAGTGTTTTATGGTCAAAGAAACAAAACTGTGGCTGAG GTGGCTCCTACTGAAGGGACAGCCCTACTGCACCTTCATGGAGATAAATGTEST: gi|192301620|gb|FG998472.1|FG998472
genomic: TTGGAGGAGAAACAGTGTTTTATGGTCAAAGAAACAAAACTGTGGCTGAGgtaaactatt ... gattttacagGTGGCTCCTACTGAAGGGACAGCCCTACTGCACCTTCATGGAGATAAATGT
EST: TTGGAGGAGAAACAGTGTTTTATGGTCAAAGAAACAAAACTGTGGCTGAG GTGGCTTCTACTGAAGGGACAGCCCTACTGCACCTTCATGGAGATAAATGTEST: gi|193482300|gb|FK445733.1|FK445733
genomic: TTGGAGGAGAAACAGTGTTTTATGGTCAAAGAAACAAAACTGTGGCTGAGgtaaactatt ... gattttacagGTGGCTCCTACTGAAGGGACAGCCCTACTGCACCTTCATGGAGATAAATGT
EST: TTGGAGGAGAAACAGTGTTTTATGGTCAAAGAAACAAAACTGTGGCTGAG GTGGCTCCTACTGAAGGGACAGCCCTACTGCACCTTCATGGAGATAAATGTEST: gi|192316313|gb|FK011672.1|FK011672
genomic: TTGGAGGAGAAACAGTGTTTTATGGTCAAAGAAACAAAACTGTGGCTGAGgtaaactatt ... gattttacagGTGGCTCCTACTGAAGGGACAGCCCTACTGCACCTTCATGGAGATAAATGT
EST: TTGGAGGAGAAACAGTGTTTTATGGTCAAAGAAACAAAACTGTGGCTGAG GTGGCTCCTACTGAAGGGACAGCCCTACTGCACCTTCATGGAGATAAATGTEST: gi|192316312|gb|FK011671.1|FK011671
genomic: TTGGAGGAGAAACAGTGTTTTATGGTCAAAGAAACAAAACTGTGGCTGAGgtaaactatt ... gattttacagGTGGCTCCTACTGAAGGGACAGCCCTACTGCACCTTCATGGAGATAAATGT
EST: TTGGAGGAGAAACAGTGTTTTATGGTCAAAGAAACAAAACTGTGGCTGAG GTGGCTCCTACTGAAGGGACAGCCCTACTGCACCTTCATGGAGATAAATGTEST: gi|37997497|gb|CF809086.1|CF809086
genomic: TTGGAGGAGAAACAGTGTTTTATGGTCAAAGAAACAAAACTGTGGCTGAGgtaaactatt ... gattttacagGTGGCTCCTACTGAAGGGACAGCCCTACTGCACCTTCATGGAGATAAATGT
EST: TTGGAGGAGAAACAGTGTTTTATGGTCAAAGAAACAAAACTGTGGCTGAG GTGGCTCCTACTGAAGGGACAGCCCTACTGCACCTTCATGGAGATAAATGTEST: gi|192310334|gb|FK002214.1|FK002214
genomic: TTGGAGGAGAAACAGTGTTTTATGGTCAAAGAAACAAAACTGTGGCTGAGgtaaactatt ... gattttacagGTGGCTCCTACTGAAGGGACAGCCCTACTGCACCTTCATGGAGATAAATGT
EST: TTGGAGGAGAAACAGTGTTTTATGGTCAAAGAAACAAAACTGTGGCTGAG GTGGTTCCTACTGAAGGGACAGCCCTACTGCACCTTCATGGAGATAAATGT
genomic: TTGGAGGAGAAACAGTGTTTTATGGTCAAAGAAACAAAACTGTGGCTGAGgtaaactatt ... gattttacagGTGGCTCCTACTGAAGGGACAGCCCTACTGCACCTTCATGGAGATAAATGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCCAAAAATGATTCCAGCAATCCCTCAGTTTCATCTGTTGATCCTTTAGTTGGAGGAGAAACAGTGTTTTATGGTCAAAGAAACAAAACTGTGGCTGAGgtaaactatttattttcttctagtgaagtatgggttggtaatatttcctttacacttcaattgagtgtgaatttttgcttaatgcaaattttggaatgtatgctttgggtgttgataatacaatattgattttacag
- - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA