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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAAGAGGAACAACCAGTGGAGCGGCCTCGAAAGACATCAAAATATATGACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcaggacatcgtgagcttaagattctgctcattgattatttctaacatgttgcctttctggttgagcag

Basic information

species Glycine max
transcript GLYMA10G38350.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38350.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv16s0100g00530.t01 (Vitis vinifera), 5'ss of exon 5
AGGAAGAGGAACAACCAGTGGAGCGGCCTCGAAAGACATCAAAATATATGACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttg--ttcaggacatcgtgagcttaagattctgctcat-----tgattatt----------tctaacatgttgcctttctggttgagcag
| ||||   |  |  | || || |||||  ||||||| ||||| |||||||| || |||||| | || || || || |||||||||||||| || ||||||||||  ||    |  |  | ||  ||| || ||  | ||     || ||  |          | |||||  ||  | |   ||||| ||||
AAGAAGTACATGAGACGGTAGAACGGCCCAGAAAGACTTCAAAGTATATGACAAAATATGAGAGAGCAAGAATCTTGGGTACCCGTGCTCTGCAGATCAGgtttggttttcttaactttttagtctaaaatccttttaatcaagttggttgatgccttaacgatttaacaaattttcatgtgggttgggcag

upper sequence: GLYMA10G38350.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv12s0028g01210.t01 (Vitis vinifera), 5'ss of exon 3
AGGAAGAGGAACAACCAGTGGAGCGGCCTCGAAAGACATCAAAATATATGACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttg--ttcaggacatcgtgagcttaagattctgctcatt--gattatttctaacatgttgcctttct-----ggttgagcag
|  ||||  |    || || || ||  |||||||||| || || |||||||| || |||||  | || ||||| || |||||||||||||| || |||||||||   ||  |||     | |   |||  | ||| | |    | |  ||  |  |||  |   |||       | ||||||||
AAAAAGAACAGGTGCCTGTAGAACGTTCTCGAAAGACTTCCAAGTATATGACAAAATATGAAAGGGCAAGGATCTTGGGTACCCGTGCTCTGCAGATCAGgttttattttcggaacctatcaatctaaagtcctgttgacctaggtggttgatgccataataatttttcatgtggattgagcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254315321|gb|GR825130.1|GR825130
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|17023174|gb|BM094208.1|BM094208
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|6913335|gb|AW394865.1|AW394865
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|298169366|gb|HO020726.1|HO020726
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|31457537|gb|CD399565.1|CD399565
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|192303951|gb|FG993837.1|FG993837
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|298187689|gb|HO031646.1|HO031646
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|26045616|gb|CA783150.1|CA783150
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|298165196|gb|HO011245.1|HO011245
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|24135619|gb|BU926129.1|BU926129
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|192316457|gb|FK008190.1|FK008190
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|151407894|gb|EV277709.1|EV277709
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|14258684|gb|BG881592.1|BG881592
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|19934747|gb|BQ079777.1|BQ079777
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|18039503|gb|BM307797.1|BM307797
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|192295900|gb|FG990910.1|FG990910
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|298192149|gb|HO036231.1|HO036231
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|16347285|gb|BI972880.1|BI972880
EST:     ACTAAGTATGAGCGTGCTAGGATTTTATGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTCGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|15814904|gb|BI787179.1|BI787179
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|254315322|gb|GR825131.1|GR825131
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|163926269|gb|EH039164.1|EH039164
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|6482337|gb|AW201604.1|AW201604
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|151403366|gb|EV273176.1|EV273176
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|7042283|gb|AW472177.1|AW472177
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         GATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|298199496|gb|HO042859.1|HO042859
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGG
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|10255441|gb|BE823207.1|BE823207
EST:     ACTAAGTATGAGCGTGCTANNATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|298181130|gb|HO022569.1|HO022569
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|22927456|gb|BU544595.1|BU544595
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTNGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|298197722|gb|HO045201.1|HO045201
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|298179996|gb|HO025211.1|HO025211
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|298198238|gb|HO039777.1|HO039777
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|19935890|gb|BQ080630.1|BQ080630
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTTTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|298168737|gb|HO009667.1|HO009667
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCGTGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|298183107|gb|HO028370.1|HO028370
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA