Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGATAAGAGGGCACTTAAGGTTGCAAAGAGAAAGCTTGGAACCCACAAACGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctatgttctttgttaatattattatgcatacaatataatttataaatctgattggcattcttgaatggtaatttcttattggtagtggctattacttatgatatttttttccattgtatgcag

Basic information

species Glycine max
transcript GLYMA10G37840.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G37840.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os05g38520.2 (Oryza sativa), 5'ss of exon 3
AGGATAAGAGGGCACTTAAGGTTGCAAAGAGAAAGCTTGGAACCCACAAACGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctatgttctttgttaatattattatgcat-acaatataatttataaatctgattggcattcttgaatggtaatttcttattggtagtggctattacttatgatatttttttccattgtatgcag
|||| ||| | ||||| ||||| ||||||||||||||||| ||||||||  | || ||||||||| | ||||| ||| |   ||| || |||||||||||||  ||     | |    || |||  |  |    | |  ||   |||  | |   ||  |  | ||         |   | | ||||  || ||  |                                 
AGGACAAGCGTGCACTGAAGGTGGCAAAGAGAAAGCTTGGCACCCACAAGAGGGCCAAGAAGAAGAGAGAGGAGATGGCTGGTGTCCTCAGGAAGATGAGgtgtgtaatcttccagccttgataaaaacacctgttattattctattggttaccttgtcttccgttgcaattgaatttgtgcctattaatattgtttgaa------------------------------

upper sequence: GLYMA10G37840.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv16s0050g00610.t01 (Vitis vinifera), 5'ss of exon 3
AGGATAAGAGGGCACTTAAGGTTGCAAAGAGAAAGCTTGGAACCCACAAACGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtc-------tatgttctttgttaatattattatgcatacaa-tataatttataaatctgattggcattcttgaatggtaatttcttattggtagtggctattacttatgatatttttttccattgtatgcag-----------------------------------------------------------
|||||||| | ||||| || ||||||||||||||||| || || |||||  | |||||||||||||||||||| ||||| | ||||||  | ||||||||||   |         ||| | ||| | | ||| | |     || || |||  ||  |   | ||| | |   |     ||||| || ||| |    | || | |||   |  || |  | |    | |    ||  |                                                           
AGGATAAGCGTGCACTGAAAGTTGCAAAGAGAAAGCTGGGTACTCACAAGAGGGCAAAGAAGAAGCGTGAGGAGATGTCTAGTGTTCTCCGCAAGATGAGgtaatttgtaataacatgctatttttcattatcagtgaatttaaaagtatgcttgttgtgtgtgaattgatattaaacatggtcatatctgaagttttgttg-tatccttactgctgctatccaacgtaacttgaggatttggttttccaatttacccatacaattaaattcttgtttatggaatgttttatgtag

upper sequence: GLYMA10G37840.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ22485 (Selaginella moellendorffii), 5'ss of exon 2
AGGATAAGAGGGCACTTAAGGTTGCAAAGAGAAAGCTTGGAACCCACAAACGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctatgttctttgttaatattattatgcatacaatataatttataaatctgattggcattcttgaatggtaatttcttattggtagtggctattacttatgatatttttttccattgtatgcag
|||| ||| | ||| | ||||| || ||| ||||||||||  | ||     | || ||||||||||| ||||||||||||| |||||| |||||||||||||  | |||||   ||| ||  ||    | || ||    | ||  | | |  |||  | | | |||                                                               
AGGACAAGCGCGCATTGAAGGTCGCCAAGCGAAAGCTTGGGTCTCATCTGAGAGCCAAGAAGAAGCGCGAGGAAATGTCCACTGTTCTAAGGAAGATGAGgt--gcctatgcattttctttctagccat-tgtat---ctttagctcacagttcttgt-gactttcag-------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120533486|gb|EH261619.1|EH261619
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG                         GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: gi|31456165|gb|CD398193.1|CD398193
EST:     TGAGGAAATGTCCTAATGTTCTTAGGAAGATGAG                         GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTAGTTACTCTTTTCTA
genomic: TGAGGAAATGTCC-AATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: gi|19269736|gb|BM885992.1|BM885992
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG                         GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: gi|213618406|gb|DB961579.1|DB961579
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG                         GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: gi|120494562|gb|EH222729.1|EH222729
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTTTTAGGAAGATGAG                         GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTTTTATTTACTCTTTTCTA
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: gi|4287211|gb|AI441157.1|AI441157
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG                         GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: gi|42722526|gb|CK768425.1|CK768425
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG                         GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: gi|15663379|gb|BI700750.1|BI700750
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG                         GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: gi|31471518|gb|CD413546.1|CD413546
EST:     CGTGCCAAGAAGAAGCGTGAGGAAATGTCCCATGTTCTTAGGAAGATGAG                         GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: gi|21601409|gb|BQ611740.1|BQ611740
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG                         GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: gi|58022088|gb|CX708829.1|CX708829
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG                         GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: gi|151396437|gb|EV266314.1|EV266314
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGGTGAG                         GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: gi|7042161|gb|AW472055.1|AW472055
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG                         GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: gi|193467898|gb|FK430407.1|FK430407
EST:     CGTGCGAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG                         GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: gi|18730445|gb|BM525882.1|BM525882
EST:     TGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG                         GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: gi|7795814|gb|AW781211.1|AW781211
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG                         GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: gi|16342062|gb|BI967657.1|BI967657
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG                         GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: gi|31561229|gb|CD487067.1|CD487067
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG                         GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: gi|151412115|gb|EV281927.1|EV281927
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG                         GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: gi|7232950|gb|AW568301.1|AW568301
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTATGAAGATGAG                         GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: gi|7232862|gb|AW568214.1|AW568214
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG                         GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: gi|15664968|gb|BI702339.1|BI702339
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG                         GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: gi|4304256|gb|AI443593.1|AI443593
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG                         GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: gi|31474246|gb|CD416274.1|CD416274
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCCATGTTCTTAGGAAGATGAG                         GGCTGGTGGGGCTGGAGACCAGAAGAAATAAGTCTTATTTACTCTTTTCTA
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: gi|213594778|gb|DB979530.1|DB979530
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG                         GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: gi|11689158|gb|BF596834.1|BF596834
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG                         GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTNTTCTA
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: gi|120531718|gb|EH259851.1|EH259851
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG                         GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: gi|21889217|gb|BQ742430.1|BQ742430
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG                         GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: gi|207781828|gb|GD750921.1|GD750921
EST:     AGGAAATGTCCAATGTTCTTAGGAAGATGAG                         GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
genomic: AGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: gi|254341148|gb|GR854876.1|GR854876
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG                         GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: gi|24136180|gb|BU926690.1|BU926690
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG                         GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: gi|31456593|gb|CD398621.1|CD398621
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG                         GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: gi|58014661|gb|CX701403.1|CX701403
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG                         GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: gi|31307850|gb|CD393053.1|CD393053
EST:     AGGAAATGTCACAAATGTTCTTAGGAAGATGAG                         GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACATCATTTTC
genomic: AGGAAATGTC-C-AATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTAC-TC-TTTTC
EST: gi|31311388|gb|CD396591.1|CD396591
EST:     CGTGCCAAGAAGAAGCGTGAGGAAATGTCCCATGTTCTTAGGAAGATGAG                         GGCTGGTGGGGCTGGAGACCAGAAGAAATAAGTCTTATTTACTCTTTTCTA
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGATAAGAGGGCACTTAAGGTTGCAAAGAGAAAGCTTGGAACCCACAAACGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctatgttctttgttaatattattatgcatacaatataatttataaatctgattggcattcttgaatggtaatttcttattggtagtggctattacttatgatatttttttccattgtatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG