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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGGATACATGCATACCAGAGGAGAAGATGCTGAAAGATCCAAGGAGACTCTATGCTCCCGGTCGCCTTTATCACATTGTTGAGAGAAAGCCTTTCAGgtatggttaaggacttaaggttccaataagagcttatgcattgcagaattgttactgtacttctggaaactaccaccagttgtttaaacacaactgtatt...

Basic information

species Glycine max
transcript GLYMA10G37820.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G37820.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os07g29794.1 (Oryza sativa), 5'ss of exon 3
TGAAGGATACATGCATACCAGAGGAGAAGATGCTGAAAGATCCAAGGAGACTCTATGCTCCCGGTCGCCTTTATCACATTGTTGAGAGAAAGCCTTTCAGgtatggttaaggacttaaggttccaataagagc--ttatgcattgcagaattgttactgtacttctggaaac-tac-caccagttgtttaaacacaactgtatt
| |  || || || ||||| ||      |||| ||| |||||||||  | |||||||| || || |||||||||||||||||||| || || || |||||||| |  |            |  | |||  ||   || |    |     |     |   ||  | || |||  ||  ||  |  || ||| |  || ||     
TTATAGACACGTGTATACCTGAAAGTGCGATGTTGAGAGATCCAAGACGTCTCTATGCACCAGGCCGCCTTTATCACATTGTTGAAAGGAAACCATTCAGgtacgacttccagtcagttctaaccatacaagtaattttattatctgttaacacaagaataactatgcaaatatattcagtatatgcttatattcatctt----

upper sequence: GLYMA10G37820.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G49050.1 (Arabidopsis thaliana), 5'ss of exon 3
TGAAGGATACATGCATACCAGAGGAGAAGATGCTGAAAGATCCAAGGAGACTCTATGCTCCCGGTCGCCTTTATCACATTGTTGAGAGAAAGCCTTTCAGgtatggttaaggacttaaggttccaataagagcttatgcattgcagaattgttactgtacttctggaaactaccaccagttgttta-aaca-caactgtatt
|||||||||||||  | |||||| | |||||||| |||||||| ||  | || |||||||| |||||| | |||||||| || || |||||||||| ||||||    |||      ||  |    ||     | |||   ||   | |   |   | ||   |     || | | |   | ||||  || | ||| ||| ||
TGAAGGATACATGTGTTCCAGAGCAAAAGATGCTCAAAGATCCTAGACGGCTTTATGCTCCTGGTCGCATGTATCACATCGTCGAAAGAAAGCCTTGCAGgtaca--taacacacaaatctatagatttacacatattacttaagggaccatggttctaaagcaacccacaatctcacttagtttgcaatatcaaatgtctt

upper sequence: GLYMA10G37820.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv16s0050g00620.t01 (Vitis vinifera), 5'ss of exon 3
TGAAGGATACATGCATACCAGAGGAGAAGATGCTGAAAGATCCAAGGAGACTCTATGCTCCCGGTCGCCTTTATCACATTGTTGAGAGAAAGCCTTTCAGgtatggttaaggacttaaggttc-caataagagcttatgcattgcagaattgttactgtacttctggaaactaccaccagttgtttaaacacaactgtatt-
|||| ||||||||| | || || ||||||||| | | |||||||||||| || ||||| || |||||||| |||||||||||||||||||||||||||||||||  | |    | ||||   | || |     || | |     ||   | |||     |  |    ||| ||  |  | |   | | | |     | ||| 
TGAAAGATACATGCGTCCCTGAAGAGAAGATGTTCAGAGATCCAAGGAGGCTGTATGCACCTGGTCGCCTCTATCACATTGTTGAGAGAAAGCCTTTCAGgtatcttcagatgcataagaaacacagtttccactcaagttgatcattgtagttgtgaaaaataaaaaaaataatatgatta--tgagaaatggtggaattg