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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACAATGCAGGAATTATGGCATGCCCTTTCAGTCTCTCTAAAGACAAAATTGAACTACAGTTTGCCACAAATCACATAGgtatgttcaatgtgtgtatgtgtattactgcgctcacgattgtctcaacctatataattgggtcttattgtttctttaaatgcacagactgagaagatgcggtagtaatcttaatcctgatgtttttatttaatataattttgcag

Basic information

species Glycine max
transcript GLYMA10G37760.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298174211|gb|HO017547.1|HO017547
EST:     CAGTCTCTCTAAAGACAAAATTGAACTACAGTTTGCCACAAATCACATAG                         GTCATTTTCTCTTGACAAATCTTTTGCTGGACACTATTGAAAAAACTTCAC
genomic: CAGTCTCTCTAAAGACAAAATTGAACTACAGTTTGCCACAAATCACATAGgtatgttcaa ... aattttgcagGTCATTTTCTCTTGACAAATCTTTTGCTGGACACTATTGAAAAAACTTCAC
EST: gi|192304810|gb|FG996026.1|FG996026
EST:     CAGTCTCTCTAAAGACAAAATTGAACTACAGTTTGCCACAAATCACATAG                         GTCATTTTCTCTTGACAAATCTTTTGCTGGACACTATTGAAAAAACTTCAC
genomic: CAGTCTCTCTAAAGACAAAATTGAACTACAGTTTGCCACAAATCACATAGgtatgttcaa ... aattttgcagGTCATTTTCTCTTGACAAATCTTTTGCTGGACACTATTGAAAAAACTTCAC
EST: gi|209724402|gb|BW658171.1|BW658171
EST:     CAGTCTCTCTAAAGACAAAATTGAACTACAGTTTGCCACAAATCACATAG                         GTCATTTTCTCTTGACAAATCTTTTGCTGGACACTATTGAAAAAACTTCAC
genomic: CAGTCTCTCTAAAGACAAAATTGAACTACAGTTTGCCACAAATCACATAGgtatgttcaa ... aattttgcagGTCATTTTCTCTTGACAAATCTTTTGCTGGACACTATTGAAAAAACTTCAC
EST: gi|57575920|gb|CX548891.1|CX548891
EST:     TAAAGACAAAATTGAACTACAG-TTGCCCACAAATCACATAG                         GTCATTTTCTCTTGACAAATCTTTTGCTGGACACTATTGAAAAAACTTCAC
genomic: TAAAGACAAAATTGAACTACAGTTTG-CCACAAATCACATAGgtatgttcaa ... aattttgcagGTCATTTTCTCTTGACAAATCTTTTGCTGGACACTATTGAAAAAACTTCAC
EST: gi|192304811|gb|FG996027.1|FG996027
EST:     CAGTCTCTCTAAAGACAAAATTGAACTACAGTTTGCCACAAATCACATAG                         GTCATTTTCTCTTGACAAATCTTTTGCTGGACACTATTGAAAAAACTTCAC
genomic: CAGTCTCTCTAAAGACAAAATTGAACTACAGTTTGCCACAAATCACATAGgtatgttcaa ... aattttgcagGTCATTTTCTCTTGACAAATCTTTTGCTGGACACTATTGAAAAAACTTCAC