Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACAGATGGACCCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACTgtaagttcatttttattcactcccttatcatgtgaacttttaaacattttattgagcccatttagacatatagttctattgcggtgcaaagtttaaatat...

Basic information

species Glycine max
transcript GLYMA10G37720.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G37720.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0083g00950.t01 (Vitis vinifera), 5'ss of exon 2
GTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACAGATGGACCCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACTgtaagttcatttttattcactcccttatcatgtgaacttttaaacattttattgag----cccatttagacatatagttctattgcggtgcaaagtttaaatat-
|||| ||||  ||||| || ||| | || ||||| ||||| ||||||||||| |  ||||| || ||  |||| |||||||| | ||||||||| ||||||||||||  |     |    | |   ||  | |   |    || || ||| ||||     | ||||| | ||  |    | ||| |  | |    ||   || | 
GTTTGTGCCGGATGGTGCAAAAGCTTGTGAACATTTTGAAGCAGATGGACCCGAGAGATCCTTTCCGAATTGAGATGACTGACATGCTTTTGGAAAAACTgtaagttgctgagcctcttattctacattttttagcc----aatcactttgttgaagtttcgcatttcggcacttgaaac-attcctattcgtgtttctgatttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207750999|gb|GD723048.1|GD723048
EST:     CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACT                         CTACAACATGGGTGTGATTCCAACCAGACAAAGCATCACACTCTGCGAACG
genomic: CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACTgtaagttcat ... tgggtgacagCTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
EST: gi|151407029|gb|EV276844.1|EV276844
EST:     CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACT                         CTACAACATGGGTGTGATTCCAACCAGGCAAAGTATCACACTCTGCGAACG
genomic: CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACTgtaagttcat ... tgggtgacagCTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
EST: gi|193481063|gb|FK444782.1|FK444782
EST:     CTGATAAGCTTTTGGAAGAAAACTA                         CTACAACATGGG
genomic: CTGATAAGCTTTTGGA-GAAA-CT-gtaagttcat ... tgggtgacagCTACAACATGGG
EST: gi|193481063|gb|FK444782.1|FK444782
EST:     CTGATAAGCTTTTGGAAGAAAACTA                         CTACAACATGGG
genomic: CTGATAAGCTTTTGGA-GAAA-CT-gtaagttcat ... tgggtgacagCTACAACATGGG
EST: gi|193720055|gb|FK653939.1|FK653939
EST:     CAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGTAGAAACT                         CTACAACATGG-TGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAAC
genomic: CAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGG-AGAAACTgtaagttcat ... tgggtgacagCTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAAC
EST: gi|193421658|gb|FK386219.1|FK386219
EST:     CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACT                         CTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
genomic: CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACTgtaagttcat ... tgggtgacagCTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
EST: gi|208081615|gb|GD879945.1|GD879945
EST:     CAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTTGGAGAAACT                         CTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
genomic: CAAAGGATCCCTTTCGGGTTGATATGACTGATAAGC-TTTTGGAGAAACTgtaagttcat ... tgggtgacagCTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
EST: gi|207711447|gb|GD693601.1|GD693601
EST:     CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACT                         CTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
genomic: CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACTgtaagttcat ... tgggtgacagCTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
EST: gi|208136558|gb|GD934156.1|GD934156
EST:     CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACT                         CTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
genomic: CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACTgtaagttcat ... tgggtgacagCTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
EST: gi|193423349|gb|FK390626.1|FK390626
EST:     CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACT                         CTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
genomic: CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACTgtaagttcat ... tgggtgacagCTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
EST: gi|193678476|gb|FK618866.1|FK618866
EST:     CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACT                         CTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
genomic: CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACTgtaagttcat ... tgggtgacagCTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
EST: gi|208149676|gb|GD947680.1|GD947680
EST:     CGGGTTTGATATGACTGATAAGCTTTTGGAGAAACT                         CTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
genomic: CGGG-TTGATATGACTGATAAGCTTTTGGAGAAACTgtaagttcat ... tgggtgacagCTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
EST: gi|208229560|gb|GE022964.1|GE022964
EST:     CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACT                         CTACAACAATAGGGTGTGATTCCAACCAGGCAA-GCATCACACTCTGCGAA
genomic: CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACTgtaagttcat ... tgggtgacagCTACAACA-T-GGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAA
EST: gi|193420490|gb|FK390483.1|FK390483
EST:     CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACT                         CTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
genomic: CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACTgtaagttcat ... tgggtgacagCTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
EST: gi|208075944|gb|GD873375.1|GD873375
EST:     CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACT                         CTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
genomic: CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACTgtaagttcat ... tgggtgacagCTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
EST: gi|193374303|gb|FK342083.1|FK342083
EST:     CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACT                         CTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
genomic: CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACTgtaagttcat ... tgggtgacagCTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
EST: gi|193327736|gb|FK295493.1|FK295493
EST:     CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACT                         CTACAACATGGGTGTGATTCCAACCAGGCAGAGCATCACACTCTGCGAACG
genomic: CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACTgtaagttcat ... tgggtgacagCTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
EST: gi|208116415|gb|GD914502.1|GD914502
EST:     CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACT                         CTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
genomic: CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACTgtaagttcat ... tgggtgacagCTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
EST: gi|207731699|gb|GD708040.1|GD708040
EST:     CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACT                         CTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
genomic: CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACTgtaagttcat ... tgggtgacagCTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
EST: gi|57574334|gb|CX547309.1|CX547309
EST:     CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACT                         CTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
genomic: CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACTgtaagttcat ... tgggtgacagCTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
EST: gi|192295691|gb|FG990545.1|FG990545
EST:     CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACT                         CTACAACATGGATGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
genomic: CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACTgtaagttcat ... tgggtgacagCTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
EST: gi|207700526|gb|GD683633.1|GD683633
EST:     TGACTGATAAGCTTTTGGAGAAACT                         CTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
genomic: TGACTGATAAGCTTTTGGAGAAACTgtaagttcat ... tgggtgacagCTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
EST: gi|208263353|gb|GE061065.1|GE061065
EST:     CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACT                         CTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
genomic: CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACTgtaagttcat ... tgggtgacagCTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
EST: gi|193651789|gb|FK595534.1|FK595534
EST:     CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACT                         CTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
genomic: CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACTgtaagttcat ... tgggtgacagCTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
EST: gi|193392005|gb|FK353362.1|FK353362
EST:     CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACT                         CTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
genomic: CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACTgtaagttcat ... tgggtgacagCTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
EST: gi|207777260|gb|GD750441.1|GD750441
EST:     CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACT                         CTACAACATGGGTGTGATTCCAACCAGGCAA-GCATCACACTCTGCGAACG
genomic: CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACTgtaagttcat ... tgggtgacagCTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
EST: gi|208274082|gb|GE072376.1|GE072376
EST:     CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACT                         CTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACCCTGCGAACG
genomic: CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACTgtaagttcat ... tgggtgacagCTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
EST: gi|58014941|gb|CX701683.1|CX701683
EST:     CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACT                         CTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG
genomic: CCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACTgtaagttcat ... tgggtgacagCTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACAGATGGACCCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACTgtaagttcatttttattcactcccttatcatgtgaacttttaaacattttattgagcccatttagacatatagttctattgcggtgcaaagtttaaatat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccctt