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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAATGGAGCCCTATTCTCATGTTGATCGTGCTAGTGGAATTGCAATACTTGCAATTGTCATACTTGTCCTATCAAATTTGGCTTCAAATGTACCAACAGgtaagtagaccgtggatctattctactgacaataattcaccatttgttttctgtttgaagcaggttggtctttcaatgtcatggggatttattaaattga...

Basic information

species Glycine max
transcript GLYMA10G37710.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G37710.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv16s0050g00780.t01 (Vitis vinifera), 5'ss of exon 2
ATAATGGAGCCCTATTCTCATGTTGATCGTGCTAGTGGAATTGCAATACTTGCAATTGTCATACTTGTCCTATCAAATTTGGCTTCAAATGTACCAACAGgtaagtagaccgtggatctattctactgacaataattcacc--atttgttttctg-tttgaagcaggttggtctttcaatgtcatggggatt-tattaaattga
 |||||||||| ||  |  |  |||| | || |||||| || ||| | |||||  |||||||||||||||| |||||| ||||||| ||||||||||| |||| || ||          |   |||    || | | ||    ||||| ||      |||    |||        |   ||  | |    |  ||||| |    
TTAATGGAGCCTTACGCAAAGATTGACCATGTTAGTGGGATCGCAGTTCTTGCTGTTGTCATACTTGTCCTGTCAAATGTGGCTTCTAATGTACCAACCGgtatgttgatgagatcagcagcttacctttaaaagtccattcaatttgattgaaaacttgggaaaggaaaaaaacttgttgataagtctttcatattaca----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|214007843|gb|DB987787.1|DB987787
EST:     GCAATTGTCATACTTGTCCTATCAAATTTGGCTTCAAAAT-TCCCAACAG                         TTCTCTTGCTTGGAGGAATTGTAGCAGATTCAGCTGCTGCAATTTCCAAAG
genomic: GCAATTGTCATACTTGTCCTATCAAATTTGGCTTC-AAATGTACCAACAGgtaagtagac ... tgttatctagTTCTCTTGCTTGGAGGAAGGGTAGCAGCCTCAGCTGCTGCAATTTCCAAAG
EST: gi|9566042|gb|BE475613.1|BE475613
EST:     TGCAATTGTCATACTTGTCCTATCAAATTTGGCTTCAAATGTACCAACAG                         TTCTCTTGCTTGGAGGAAGGGTAGCAGCCTCAGCTGCTGCAATTTCCAAAG
genomic: TGCAATTGTCATACTTGTCCTATCAAATTTGGCTTCAAATGTACCAACAGgtaagtagac ... tgttatctagTTCTCTTGCTTGGAGGAAGGGTAGCAGCCTCAGCTGCTGCAATTTCCAAAG
EST: gi|23733515|gb|BU764956.1|BU764956
EST:     TGCAATTGTCATACTTGTCCTATCAAATTTGGCTTCAAATGTACCAACAG                         TTCTCTTGCTTGGAGGAAGGGTAGCAGCCTCAGCTGCTGCAATTTCCAAAG
genomic: TGCAATTGTCATACTTGTCCTATCAAATTTGGCTTCAAATGTACCAACAGgtaagtagac ... tgttatctagTTCTCTTGCTTGGAGGAAGGGTAGCAGCCTCAGCTGCTGCAATTTCCAAAG
EST: gi|4397050|gb|AI496047.1|AI496047
EST:     TGCAATTGTCATACTTGTCCTATCAAATTTGGCTTCAAATGTACCAACAG                         TTCTCTTGCTTGGAGGAAGGGTAGCAGCCTCAGCTGCTGCAATTTCCAAAG
genomic: TGCAATTGTCATACTTGTCCTATCAAATTTGGCTTCAAATGTACCAACAGgtaagtagac ... tgttatctagTTCTCTTGCTTGGAGGAAGGGTAGCAGCCTCAGCTGCTGCAATTTCCAAAG
EST: gi|6848242|gb|AW350532.1|AW350532
EST:     TGCAATTGTCATACTTGTCCTATCAAATTTGGCTTCAAATGTACCAACAG                         TTCTCTTGCTTGGAGGAAGGGTAGCAGCCTCAGCTGCTGCAATTTCCAAAG
genomic: TGCAATTGTCATACTTGTCCTATCAAATTTGGCTTCAAATGTACCAACAGgtaagtagac ... tgttatctagTTCTCTTGCTTGGAGGAAGGGTAGCAGCCTCAGCTGCTGCAATTTCCAAAG