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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCATATTTGATAGAGATCATGTACTCTGATCAAATCCAGATATCATTTCTCACTTTGGTCAACTCGCCTACCTGGTTTGTCCATCCAGTATACAGTAGgtttgacaaggcttctttgttcaactttgttaacatcagtgcattcttttttctttcaatgtgtttaatttttctaataaggctttatatatatctccag

Basic information

species Glycine max
transcript GLYMA10G37530.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G37530.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv16s0050g01110.t01 (Vitis vinifera), 5'ss of exon 15
GGCCATATTTGATAGAGATCATGTACTCTGATCAAATCCAGATATCATTTCTCACTTTGGTCAACTCGCCTACCTGGTTTGTCCATCCAGTATACAGTAGgtttgacaaggcttctttgttcaactttgttaacatcagtgcattcttttttctttcaatgtgtttaatttttctaataaggctttatatatatctccag-------------
| || || ||||||||||||||||||||||||||  ||||||| ||    || | |||| || |||| ||  | |||  ||| |||||    ||||| ||||||  |     |||| | |  |  ||  | |     | |  |   ||| |        | |   || |   | |  | | | ||    ||  | |  |              
GACCCTACTTGATAGAGATCATGTACTCTGATCAGGTCCAGATTTCTAACCTTATTTTGATCGACTCTCCATCATGGAATGTTCATCCCACTTACAGCAGgtttccccctttttctctctgta--ttcatcatttggaatttacattttgtcagagtcgtattcatagtcccttttcttatgtttctggtacttgttgaactccaatttgcag