Sequence
atgc intronic sequence ATGC exonic sequenceAAGTGCTCGACGAAATCTTCAGGGTTATGAAATTAATGGGCGGCAATTACGCGTTGATTTTGCTGAAAATGATAAAGGGAATGATAGAAACCGAGAACAGgtatattgtcaaaacttcttagaatagtgacaagttagttattctcccaaatctttgctatttttactttaaagaaagtgcaaatcacctgaaaagaagt...
Basic information
species | Glycine max |
transcript | GLYMA10G36350.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G36350.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os11g07490.1 (Oryza sativa), 5'ss of exon 3
AAGTGCTCGACGAAATCTTCAGGGTTATGAAATTAATGGGCGGCAATTACGCGTTGATTTTGCTGAAAATGATAAAGGGAATGATAGAAACCGAGAACAGgtatattgtcaa-aacttcttagaatagtgacaagttagttatt--ctcccaaatctttgctatttttactttaaagaaagtgcaaatcacctgaaaagaagt-
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AAGTGCACGCCGGAACCTTCAAGGTTATGAAATTAATGGCCGTCAGTTACGTGTTGATTTTGCTGAAAATGGGAGGAATGCTGACAGAAACAGAGAAAAGgtcgaagatcctcagtttcttactgtagaagaaacacatttctcaacttccaattc----ctatgttaagatgagagcttgtattgctttggttcccatgaatg
upper sequence: GLYMA10G36350.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G096480_T03 (Zea mays), 5'ss of exon 3
AAGTGCTCGACGAAATCTTCAGGGTTATGAAATTAATGGGCGGCAATTACGCGTTGATTTTGCTGAAAATGATAAAGGGAATGATAGAAACCGAGAACAGgt--atattgtcaaaacttcttagaatagtgacaagttagttattctcccaaatctttgctatttttactttaaagaaagtgcaaatcacctgaaaagaagt
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AAGTGCACGCCGGAACCTTCAGGGTTACGAGATTAATGGTCGTCAGTTACGTGTTGATTTTGCTGAAAGTGGGAGGAACACTGATAGAAATAGAGAAAAGgtcgacaatcctcaaaattattgtagaagagcctttcctaccactttgg-agttctctgttaatatgagaagttgtatagtctttgtt-cctgtgaataata
upper sequence: GLYMA10G36350.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G174919_T01 (Zea mays), 5'ss of exon 3
AAGTGCTCGACGAAATCTTCAGGGTTATGAAATTAATGGGCGGCAATTACGCGTTGATTTTGCTGAAAATGATAAAGGGAATGATAGAAACCGAGAACAGgtatattgtcaa-aacttcttagaatagtgacaagttagttattctcccaaatctttgctatttttactttaaag--aaagtgcaaatcacctgaaaagaagt
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AAGTGCACGGCGGAACCTTCAGGGTTACGAGATCAATGGTCGTCAGTTACGGGTTGATTTTGCTGAAAATGGGAGGAACACTGACAGAAATAGAGAAAAGgtcgacgatcctcaaatttttactgtagaagagcctttcctaccacctttggagttctctgttaat-ctgagaagttgtattgtcttcgttctgtgaatga--
upper sequence: GLYMA10G36350.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G71800.1 (Arabidopsis thaliana), 5'ss of exon 3
AAGTGCTCGACGAAATCTTCAGGGTTATGAAATTAATGGGCGGCAATTACGCGTTGATTTTGCTGAAAATGATAAAGGGAATGATAGAAACCGAGAACAGgtatattgtcaaaacttcttagaatagtgacaagttagttattctcccaa-atctttgctatttttactttaaagaaagtgcaaatcacctgaaaagaagt
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AAGTGCTCGTCGTAATCTTCAGAGTTATGAAATCAATGGTCGTCAATTAAGAGTTGATTTTGCTGAGAATGACAAAGGCACTGACAAAACCCGTGATCAGgt-tactcctctctctctttcttctttcaat--gttggatggtttttaactgttgtcaagaagttataactaaagatggtaaatttgggttttcag-----
upper sequence: GLYMA10G36350.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv18s0001g01800.t01 (Vitis vinifera), 5'ss of exon 3
AAGTGCTCGACGAAATCTTCAGGGTTATGAAATTAATGGGCGGCAATTACGCGTTGATTTTGCTGAAAATGATAAAGGGAATGATAGAAACCGAGAACAGgtatattgtcaaaacttcttagaatagtgacaagttagttattctcccaaatctttgctatttttactttaaagaaagtgcaaatcacctgaaaagaagt-------
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AAGTGCTCGTCGTAATCTTCAGGGCTATGAGATCAATGGCCGGCAATTACGAGTCGATTTTGCTGAAAATGATAAAGGTGCTGACCGAAATAGAGAACAGgtaagacttttagatgcctggctatg-----aaatccttcattttctctgtttattttgcttggtttcatcatgaaggtcca--tgactttcttaggagtctgaagaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|26048833|gb|CA785286.1|CA785286EST: GCGTTGATTTTGCTGAAAATGATAAAGGGAATGATAGAAACCGAGAACAG GGTCGTGGCGGTCCTGGAATGACTACAAATGTTG
genomic: GCGTTGATTTTGCTGAAAATGATAAAGGGAATGATAGAAACCGAGAACAGgtatattgtc ... tctggcacagGGTCGTGGCGGTCCTGGAATGACTACAAATGTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAGTGCTCGACGAAATCTTCAGGGTTATGAAATTAATGGGCGGCAATTACGCGTTGATTTTGCTGAAAATGATAAAGGGAATGATAGAAACCGAGAACAGgtatattgtcaaaacttcttagaatagtgacaagttagttattctcccaaatctttgctatttttactttaaagaaagtgcaaatcacctgaaaagaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaagaa