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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGTTTCTGCTCAGAGGTACTGTGAAGCATTAGATATCCTACATTCAGGAGCGTGCATTCAATTGTCTCATGGGCAGgttctacatcttctatttcaatgtctttcaagatatacttttgtcaattttataatctttagtctggcatataagtgtgattagtagattgttcattgtt...

Basic information

species Glycine max
transcript GLYMA10G35830.5
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192300499|gb|FG988856.1|FG988856
EST:     CATTAGATATCCTACATTCAGGAGCGTGCATTCAATTGTCTCATGGGCAG                         GTTACCTGTGGAGCAGAGCTAGCTCTATTGTTTGTGGAGACATTAGGGAAA
genomic: CATTAGATATCCTACATTCAGGAGCGTGCATTCAATTGTCTCATGGGCAGgttctacatc ... tctctctaagGTTACCTGTGGAGCAGAGCTAGCTCTATTGTTTGTGGAGACATTAGGGAAA
EST: gi|298175730|gb|HO018327.1|HO018327
EST:     CATTAGATATCCTACATTCAGGAGCGTGCATTCGATTGTCTCATGGGCAG                         GTTACCTGTGGAGCAGAGCTAGCTCTATTGTTTGTGGAGACATTAGGGAAA
genomic: CATTAGATATCCTACATTCAGGAGCGTGCATTCAATTGTCTCATGGGCAGgttctacatc ... tctctctaagGTTACCTGTGGAGCAGAGCTAGCTCTATTGTTTGTGGAGACATTAGGGAAA
EST: gi|7232476|gb|AW567831.1|AW567831
EST:     CATTAGATATCCTACATTCAGGAGCGTGCATTCAATTGTCTCATGGGCAG                         GTTACCTGTGGAGCAGAGCTAGCTCTATTGTTTGTGGAGACATTAGGGAAA
genomic: CATTAGATATCCTACATTCAGGAGCGTGCATTCAATTGTCTCATGGGCAGgttctacatc ... tctctctaagGTTACCTGTGGAGCAGAGCTAGCTCTATTGTTTGTGGAGACATTAGGGAAA
EST: gi|151412195|gb|EV282007.1|EV282007
EST:     CATTAGATATCCTACATTCAGGAGCGTGCATTCAATTGTCTCATGGGCAG                         GTTACCTGTGGAGCAGAGCTAGCTCTATTGTTTGTGGAGACATTAGGGAAA
genomic: CATTAGATATCCTACATTCAGGAGCGTGCATTCAATTGTCTCATGGGCAGgttctacatc ... tctctctaagGTTACCTGTGGAGCAGAGCTAGCTCTATTGTTTGTGGAGACATTAGGGAAA