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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGGATTTGGCGGGGCTTTCGGTTTTGATGCATTTTCTGAGAAGTGGAACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAGgtatacattacattcaatctgctgttctagtcactattaccaagacattctataagaattttcttggtgagtttttaagtcatgaattacacggttgggc...

Basic information

species Glycine max
transcript GLYMA10G35680.3
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17401008|gb|BM177790.1|BM177790
EST:     ACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAG                         GATGGTTCAAAGCATGAGGCCAACAATGATTGGCTTCAAAATGGTAACTGC
genomic: ACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAGgtatacatta ... tgatgttcagGATGGTTCAAAGCATGAGGCCAACAATGATTGGCTTCAAAATGGTAACTGC
EST: gi|192330388|gb|FK021175.1|FK021175
EST:     ACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAG                         GATGGTTCAAAGCATGAGGCCAACAATGATTGGCTTCAAAATGGTAACTGC
genomic: ACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAGgtatacatta ... tgatgttcagGATGGTTCAAAGCATGAGGCCAACAATGATTGGCTTCAAAATGGTAACTGC
EST: gi|21678119|gb|BQ630461.1|BQ630461
EST:     ACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAG                         GATGGTTCAAAGCATGAGGCCAACAATGATTGGCTT
genomic: ACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAGgtatacatta ... tgatgttcagGATGGTTCAAAGCATGAGGCCAACAATGATTGGCTT
EST: gi|192306573|gb|FG997243.1|FG997243
EST:     ACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAG                         GATGGTTCAAAGCATGAGGCCAACAATGATTGGCTTCAAAATGGTAACTGC
genomic: ACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAGgtatacatta ... tgatgttcagGATGGTTCAAAGCATGAGGCCAACAATGATTGGCTTCAAAATGGTAACTGC
EST: gi|27425537|gb|CA937057.1|CA937057
EST:     ACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAG                         GATGGTTCAAAGCATGAGGCCAACAATGATTGGCTTCAAAATGGTAACTGC
genomic: ACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAGgtatacatta ... tgatgttcagGATGGTTCAAAGCATGAGGCCAACAATGATTGGCTTCAAAATGGTAACTGC
EST: gi|192326462|gb|FK017719.1|FK017719
EST:     ACAGCCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAG                         GATGGTTCAAAGCATGAG-CCAACAATGATTGGCTTCAAAATGGTAACTGC
genomic: ACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAGgtatacatta ... tgatgttcagGATGGTTCAAAGCATGAGGCCAACAATGATTGGCTTCAAAATGGTAACTGC
EST: gi|192307013|gb|FK002679.1|FK002679
EST:     ACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAG                         GATGGTTCAAAGCATGAGGCCAACAATGATTGGCTTCAAAATGGTAACTGC
genomic: ACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAGgtatacatta ... tgatgttcagGATGGTTCAAAGCATGAGGCCAACAATGATTGGCTTCAAAATGGTAACTGC
EST: gi|192322721|gb|FK014412.1|FK014412
EST:     ACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAG                         GATGGTTCAAAGCATGAGGCCAACAATGATTGGCTTCAAAATGGTAACTGC
genomic: ACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAGgtatacatta ... tgatgttcagGATGGTTCAAAGCATGAGGCCAACAATGATTGGCTTCAAAATGGTAACTGC
EST: gi|192324374|gb|FK015725.1|FK015725
EST:     ACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAG                         GATGGTTCAAAGCATGAGGCCAACAATGATTGGCTTCAAAATGGTAACTGC
genomic: ACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAGgtatacatta ... tgatgttcagGATGGTTCAAAGCATGAGGCCAACAATGATTGGCTTCAAAATGGTAACTGC
EST: gi|151412720|gb|EV282532.1|EV282532
EST:     ACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAG                         GATGGTTCAAAGCATGAGGCCAACAATGATTGGCTTCAAAATGGTAACTGC
genomic: ACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAGgtatacatta ... tgatgttcagGATGGTTCAAAGCATGAGGCCAACAATGATTGGCTTCAAAATGGTAACTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTTGGATTTGGCGGGGCTTTCGGTTTTGATGCATTTTCTGAGAAGTGGAACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAGgtatacattacattcaatctgctgttctagtcactattaccaagacattctataagaattttcttggtgagtttttaagtcatgaattacacggttgggc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA