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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatatgttatttagtacttttatttttattttttaatgtaattttttttaatatagtttatgacaaaaaaatattgtcgtcttgatatgttaattattccatggaattgttcttatatgttttagactttgtaatgtaag

Basic information

species Glycine max
transcript GLYMA10G35230.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35230.3 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os03g05740.1 (Oryza sativa), 5'ss of exon 3
CTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatatgttatttagtacttttatttttattttttaatgtaattttttttaatatagtttatgacaaaaaaatattgtcgtcttgatatgttaa--ttattccatggaattgttcttatatgttttagactttgtaatgtaag
 | ||  |  | ||||| |||||||| || ||||| || |||||||| || ||||||||||||||||||||||| || || ||||| | ||  |||| || ||| || ||| ||| | ||  |||||| ||| ||     || | |  ||||     |  |   |  ||     | | ||||  ||||| | |  |||  ||                             
TTGGTATTGCTTGGTGACTCTGGTGTAGGGAAAAGTTGCATTGTTCTTCGCTTTGTTCGTGGTCAGTTTGATCCCACTTCCAAGgtgattac-tgtt-ttgagt-ctcttagtttcagttgataatgttattcttcaccttaga-tgcatgattcttactttcagaagttcgattgttttaaacttatttcctcaaataatttcag-------------------------

upper sequence: GLYMA10G35230.3 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os10g30520.1 (Oryza sativa), 5'ss of exon 3
CTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgt-aaatatatg-ttatttagtacttttatttttattttttaatgta-attttttttaatatagtttatgacaaaaaaatattgtcgtcttgatatgttaattattccatggaattgttcttatatgttttagactttgtaatgtaag
 | ||  |  | || ||||| |||||||| ||||| || |||||||| || ||||| |||||||||||||| || || || ||||| ||| | |   ||  ||| |  ||  |  |||  | |  |  | | |     ||| ||      ||| | |      |||| |  |||   | ||||  |||||  ||| | ||                                
TTGGTATTGCTTGGAGATTCAGGTGTTGGGAAAAGTTGCATTGTTCTTCGCTTTGTCCGTGGTCAGTTTGACCCCACTTCAAAGgtgaaacagacacttgattattttttacaggtttcctgtacagaggacacaccatttgattctccctataatatggct-tattctattct--gtttgtt--ttattaaatgaatttag------------------------------

upper sequence: GLYMA10G35230.3 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G362088_T02 (Zea mays), 5'ss of exon 4
CTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatatgttatttagtacttttatttttattttttaatgtaattttttttaatatagtttatgacaaaaaaatattgtcgtcttgatatgttaattattccatggaattgttcttatatgttttagactttgtaatgtaag
 | ||  |  | || || || |||||||| ||||| || |||||||| || ||||||||||||||||||||||| || || ||||| | |   |  | ||| |     | |  |  |    | |||| || |||  ||    | | ||    ||     || |   |  |||    | | || |  |  |  |                                    
TTGGTATTGCTGGGAGACTCAGGTGTTGGGAAAAGTTGCATTGTTCTTCGTTTTGTTCGTGGTCAGTTTGATCCTACTTCCAAGgtgatt---tactgttttga----tcagatcgacccatgaatgaaactttactt----tcggttgcagcatttccat-tccccaacttatcttctcaaatggtt-acag------------------------------------

upper sequence: GLYMA10G35230.3 (Glycine max), 5'ss of exon 3
lower sequence: AT3G54840.2 (Arabidopsis thaliana), 5'ss of exon 3
CTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatata----tgttatttagtacttttatttttattttttaatgtaattttttt-taatatagtttatgacaaaaaaatattgtcgtcttgatatgttaattattccatggaattgttcttatatgttttagactttgtaatgtaag
 | ||||| ||||| || ||||||||||||||||| |||||||| || |||||||| ||||||||||||||  | ||||||||||||| || |    |||||| || |  | || | || |   | | |     ||||     |  ||  | |      |   ||||||    | ||    | | | ||||       | | | ||| |    |  ||| || ||||       
TTAGTTCTATTAGGAGACTCTGGTGTTGGTAAAAGTTGTATTGTCCTTCGATTTGTACGTGGTCAGTTTGACGCTACATCTAAGgtaagtaaagccttgttatctaattgtctt-tattgaccatctgacacctttttagaacaccatgctctgatgtgagtgaatattagactattagagtat-acttatctgcc--actagatctcaagactactag-ctatgtatcag---

upper sequence: GLYMA10G35230.3 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0019g04680.t01 (Vitis vinifera), 5'ss of exon 3
CTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaa-------------tatatgttatttagtac---ttttatttttattttttaatgta----attttttttaatatagtttatgacaaaaaaatattgtcgtc----ttgatatgttaa-----------ttattccatgg-aattgttcttatatgttttagactttgtaatgtaag
|| ||| | || || |||||||||||||| ||||||||||||||||| || ||||||||||| |||||||| || ||||| |||||||              ||||| |||| |  | |   |||| |||||   ||||| | ||    ||| | || ||  | ||||    | ||   || ||  | ||     |   |||  ||           ||||| ||||  |  | | |||| ||   ||   |||  |||  | ||
CTGGTTTTGTTGGGGGATTCTGGTGTTGGAAAAAGCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAGgtaagaaatatacatagctatatattatgtgatgcacattttttttttcccttttattatattaaattctgttcaaccttgttttgtgccaatggatgttagcatcaatcctctcatgcaaaatacatggatgttatttcatgatagatttacttagattggttgatcttaataacttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5605755|gb|AI899819.1|AI899819
EST:     GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG                         GTAACTGTTGGAGCTTCTTTTTTGTCGCANACAATAGCTCTGCAAGACTCT
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCT
EST: gi|193543327|gb|FK502506.1|FK502506
EST:     GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG                         GTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCT
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCT
EST: gi|193724791|gb|FK658075.1|FK658075
EST:     GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG                         GTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCT
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCT
EST: gi|15813084|gb|BI785359.1|BI785359
EST:     GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG                         GTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCT
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCT
EST: gi|308098577|gb|HO760318.1|HO760318
EST:     GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG                         GTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCT
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCT
EST: gi|298165609|gb|HO011658.1|HO011658
EST:     GCTGTATTGTTCTGCGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG                         GTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCT
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCT
EST: gi|298183380|gb|HO028593.1|HO028593
EST:     GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG                         GTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCT
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCT
EST: gi|7286166|gb|AW598653.1|AW598653
EST:     GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG                         GTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCT
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCT
EST: gi|298177777|gb|HO027330.1|HO027330
EST:     GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG                         GTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCT
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCT
EST: gi|298182667|gb|HO031402.1|HO031402
EST:     GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG                         GTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCT
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCT
EST: gi|298185154|gb|HO030367.1|HO030367
EST:     GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG                         GTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCT
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCT
EST: gi|15201204|gb|BI424748.1|BI424748
EST:     GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG                         GTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCT
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCT
EST: gi|298174351|gb|HO017687.1|HO017687
EST:     GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG                         GTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCT
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCT