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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGAAGTATAAATGGGAGCCACTCAGGGATGACCTTGAGTTTGGAAACTCTGCATACCCTATGGTCTTGGTGCAAATTCCAATGTACAATGAGAAAGAGgtattactattactatagagttatcccattcaataaaagtcttttctttatctataaaggaaaactgttatgacatggattgttttcttgaattttttattttttttttactgaagtgaaagtttttgagagtactgtttcattggttgcag

Basic information

species Glycine max
transcript GLYMA10G34550.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G34550.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0074g00500.t01 (Vitis vinifera), 5'ss of exon 1
AAAGAAGTATAAATGGGAGCCACTCAGGGATGACCTTGAGTTTGGAAACTCTGCATACCCTATGGTCTTGGTGCAAATTCCAATGTACAATGAGAAAGAGgtattactattactatagagttatcccattcaataaaagtcttttctttatctataaaggaaaactgttatgacatggattgttttcttgaattttttattttttttttactgaagtgaaagtttttgagagtactgtttcattggttgcag
  ||   || || ||||||||  | | ||| ||  | ||| |||| || || || ||||| |||||  | |||||||| |||||||||||||| |||||||||  |        |||   | |||    |||  |   ||| |    || | | | |        | | | |   |   | |      ||| ||| |  |||| ||| | | |                                       
GCAGCGCTACAACTGGGAGCCCATGAAGGACGATGTCGAGCTTGGGAATTCAGCTTACCCAATGGTTCTTGTGCAAATCCCAATGTACAATGAAAAAGAGgtaccaa-------ataatatcatcatgatcatca--ggtcctgaaattttttgtca--------tatcacgttctc--tcgcacatctgattttctgcttttgtttctgcag---------------------------------------