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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAGgtatctataactatactcttttttcttttatcttcaatcttaatgatggtattgttgcttctagaatcttgtttttgtcgtcctttcaatctattataag...

Basic information

species Glycine max
transcript GLYMA10G34370.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120532166|gb|EH260299.1|EH260299
EST:     GGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAG                         GCTGCCTCAGGTTCTATACCAAGTGCAGACACAAGTAGTGCCGATAAGGAG
genomic: GGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAGgtatctataa ... tcttttgcagGCTGCCTCAGGTTCTATACCAAGTGCAGACACAAGTAGTGCCGATAAGGAG
EST: gi|192332512|gb|FK024273.1|FK024273
EST:     GGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAG                         GCTGCCTCAGGTTCTATACCAAGTGCAGACACAAGTAGTGCCGATAAGGAG
genomic: GGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAGgtatctataa ... tcttttgcagGCTGCCTCAGGTTCTATACCAAGTGCAGACACAAGTAGTGCCGATAAGGAG
EST: gi|17022153|gb|BM093187.1|BM093187
EST:     GGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAG                         GCTGCCTCAGGTTCTATACCAAGTGCAGACACAAGTAGTGCCGATAAGGAG
genomic: GGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAGgtatctataa ... tcttttgcagGCTGCCTCAGGTTCTATACCAAGTGCAGACACAAGTAGTGCCGATAAGGAG
EST: gi|26047793|gb|CA784466.1|CA784466
EST:     GGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAG                         GCTGCCTCAGGTTCTATACCAAGTGCAGACACAAGTAGTGCCGATAAGGAG
genomic: GGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAGgtatctataa ... tcttttgcagGCTGCCTCAGGTTCTATACCAAGTGCAGACACAAGTAGTGCCGATAAGGAG
EST: gi|213617950|gb|DB967312.1|DB967312
EST:     GGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAG                         GCTGCCTCAGGTTCTATACCAAGTGCAGACACAAGTAGTGCCGATAAGGAG
genomic: GGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAGgtatctataa ... tcttttgcagGCTGCCTCAGGTTCTATACCAAGTGCAGACACAAGTAGTGCCGATAAGGAG
EST: gi|10845400|gb|BF068537.1|BF068537
EST:     GGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAG                         GCTGCCTCAGGTTCTATACCAAGTGCAGACACAAGTAGTGCCGATAAGGAG
genomic: GGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAGgtatctataa ... tcttttgcagGCTGCCTCAGGTTCTATACCAAGTGCAGACACAAGTAGTGCCGATAAGGAG
EST: gi|24205361|gb|BU964614.1|BU964614
EST:     GGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAG                         GCTGCCTCAGGTTCTATACCAAGTGCAGACACAAGTAGTGCCGATAAGGAG
genomic: GGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAGgtatctataa ... tcttttgcagGCTGCCTCAGGTTCTATACCAAGTGCAGACACAAGTAGTGCCGATAAGGAG
EST: gi|209709966|gb|BW681009.1|BW681009
EST:     GGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAG                         GCTGCCTCAGGTTCTATACCAAGTGCAGACACAAGTAGTGCCGATAAGGAG
genomic: GGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAGgtatctataa ... tcttttgcagGCTGCCTCAGGTTCTATACCAAGTGCAGACACAAGTAGTGCCGATAAGGAG
EST: gi|7589574|gb|AW705345.1|AW705345
EST:     GGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAG                         GCTGCCTCAGGTTCTATACCAAGTGCAGACACAAGTAGTGCCGATAAGGAG
genomic: GGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAGgtatctataa ... tcttttgcagGCTGCCTCAGGTTCTATACCAAGTGCAGACACAAGTAGTGCCGATAAGGAG