1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CATGCTACAGCAGTAGTTGATGAAAAATTATACATTGCTGGTGGGAGTCGTAATGGTCGATACTTATCTGATGTTCAGgtatagggtttgaactgatgcttctgaatcttcgactttttgtagtgtgtctcatgatttagtttgcag
species | Glycine max |
transcript | GLYMA10G34180.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TATACATTGCTGGTGGGAGTCGTAATGGTCGATACTTATCTGATGTTCAG GTTTTTGATTTAAGAAGTTTGATGTGGTCTTCTCTGAAACTAAAAGCAAATEST: gi|193631611|gb|FK582294.1|FK582294
genomic: TATACATTGCTGGTGGGAGTCGTAATGGTCGATACTTATCTGATGTTCAGgtatagggtt ... tagtttgcagGTTTTTGATTTAAGAAGTTTGATGTGGTCTTCTCTGAAACTAAAAGCAAAT
EST: AATACATTGCTGGTGGGAGTCGTAATGGTCGATACTTATCTGATGTTCAG GTTTTTGATTTAAGAAGTTTGATGTGGTCTTCTCTGAAACTAAAAGCAAATEST: gi|151395590|gb|EV265467.1|EV265467
genomic: -ATACATTGCTGGTGGGAGTCGTAATGGTCGATACTTATCTGATGTTCAGgtatagggtt ... tagtttgcagGTTTTTGATTTAAGAAGTTTGATGTGGTCTTCTCTGAAACTAAAAGCAAAT
EST: TATACATTGCTGGTGGGAGTCGTAATGGTCGATACTTATCTGATGTTCAG GTTTTTGATTTAAGAAGTTTGATGTGGTCTTCTCTGAAACTAAAAGCAAATEST: gi|208340682|gb|GE133618.1|GE133618
genomic: TATACATTGCTGGTGGGAGTCGTAATGGTCGATACTTATCTGATGTTCAGgtatagggtt ... tagtttgcagGTTTTTGATTTAAGAAGTTTGATGTGGTCTTCTCTGAAACTAAAAGCAAAT
EST: TATACATTGCTGGTGGGAGTCGTAATGGTCGATACTTATCTGATGTTCAG GTTTTTGATTTAAGAAGTTTGATGTGGTCTTCTCTGAAACTAAAAGCAAATEST: gi|21285502|gb|BQ473373.1|BQ473373
genomic: TATACATTGCTGGTGGGAGTCGTAATGGTCGATACTTATCTGATGTTCAGgtatagggtt ... tagtttgcagGTTTTTGATTTAAGAAGTTTGATGTGGTCTTCTCTGAAACTAAAAGCAAAT
EST: TATACATTGCTGGTGGGAGTCGTAATGGTCGATACTTATCTGATGTTCAG GTTTTTGATTTAAGAAGTTTGATGTGGTCTTCTCTGAAACTAAAAGCAAAT
genomic: TATACATTGCTGGTGGGAGTCGTAATGGTCGATACTTATCTGATGTTCAGgtatagggtt ... tagtttgcagGTTTTTGATTTAAGAAGTTTGATGTGGTCTTCTCTGAAACTAAAAGCAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGCTACAGCAGTAGTTGATGAAAAATTATACATTGCTGGTGGGAGTCGTAATGGTCGATACTTATCTGATGTTCAGgtatagggtttgaactgatgcttctgaatcttcgactttttgtagtgtgtctcatgatttagtttgcag
- - - - - - - - - - - - - - - - - - - TGGTGG