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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGATGAAGAAACTGGACAGATACCAATGGCATATGTGGTGAGAGCAGCTGGTTCTGAACTCTCAGAAAACCAAGTCATTCAATTTGTTGCAGGCCAGgtagctctctttcctatgctcattttaactatttttttattttacttaaagtaaaatggagaattttcag

Basic information

species Glycine max
transcript GLYMA10G34160.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G34160.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0019g05260.t01 (Vitis vinifera), 5'ss of exon 5
TGAAGATGAAGAAACTGGACAGATACCAATGGCATATGTGGTGAGAGCAGCTGGTTCTGAACTCTCAGAAAACCAAGTCATTCAATTTGTTGCAGGCCAGgta-gctctctttcctatgctcatt-ttaactatttttttattttacttaaagtaaaatggagaattttcag
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TGAAGATGAAGCAGCAGGGCAGATACCAATGGCATATGTAGTGAGAGCAGGTGGATCTGAACTCACCCAACAAGAAGTCATTCAATTTGTAGCTGGCCAGgtttgttttagctccttccctcaccctttcccataagaaaacttctttcaaattttaatgtccg-ttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51343487|gb|CO984220.1|CO984220
EST:     CTGGTTCTGAACTCTCAGAAAACCAAGTCATTCAATTTGTTGCAGGCCAG                         GTGGCTCCATATAAGAAAGTGAGAAAGGTGAGTTTCATTGACACTATTCCA
genomic: CTGGTTCTGAACTCTCAGAAAACCAAGTCATTCAATTTGTTGCAGGCCAGgtagctctct ... gaattttcagGTGGCTCCATATAAGAAAGTGAGAAAGGTGAGTTTCATTGACACTATTCCA
EST: gi|17964740|gb|BM271470.1|BM271470
EST:     CTGGTTCTGAACTCTCAGAAAACCAAGTCATTCAATTTGTTGCAGGCCAG                         GTGGCTCCATATAAGAAAGTGAGAAAGGTGAGTTTCATTGACACTATTCCA
genomic: CTGGTTCTGAACTCTCAGAAAACCAAGTCATTCAATTTGTTGCAGGCCAGgtagctctct ... gaattttcagGTGGCTCCATATAAGAAAGTGAGAAAGGTGAGTTTCATTGACACTATTCCA