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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGACTACCATGGCTGCGTTTTCTTTCCTGAGCGATGGTTTAATTGTGTGGTTGTACTTCAAACTGATAACACCATTTTGTATGATCGTTTGAGTAGGAGgtatggaagcacttgtaattctgttatttaacgttggttttgctatactctattagtggtttcattatcatagcttactttccccgtatatgtgacag

Basic information

species Glycine max
transcript GLYMA10G33100.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G33100.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G60340.1 (Arabidopsis thaliana), 5'ss of exon 2
TGGACTACCATGGCTGCGTTTTCTTTCCTGAGCGATGGTTTAATTGTGTGGTTGTACTTCAAACTGATAACACCATTTTGTATGATCGTTTGAGTAGGAGgtatggaagcacttgtaattctgtta--tttaacgttggttttgctatactctattagtggtttcattatcatagcttactttccccgtatatgtgacag
|||||||||||||||| |  ||||||||| ||||||||||| || | || || || |||| ||| || ||| || |||||||||| ||||| |  |  ||||  |     | ||  || ||  | |  | ||   || ||||   |   || ||  |  | | | ||| |  |  || |     ||     |        
TGGACTACCATGGCTGTGACTTCTTTCCTCAGCGATGGTTTGATCGCGTTGTCGTGCTTCGAACCGAGAACTCCGTTTTGTATGACCGTTTAACGAATAGgtcag-----atttccaaatccatcaaatgtagttttagtttgttttcgctttagcaaggttctgattgtgttctctcaaccaaccaaagcag-------

upper sequence: GLYMA10G33100.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0004g03280.t01 (Vitis vinifera), 5'ss of exon 2
TGGACTACCATGGCTGCGTTTTCTTTCCTGAGCGATGGTTTAATTGTGTGGTTGTACTTCAAACTGATAACACCATTTTGTATGATCGTTTGAGTAGGAGgtatggaagcacttg-taattctgttatttaacgttggttttgctatactctattagtggtttcattatcatagcttactttccccgtatatgtgacag
||||||||||||| || | |||||| ||||||||||||||| || ||||||| || |||||||| || ||| |  | |||||||| ||  ||||||  |||||  || |   ||| | |     | || |    |||||||    |||| ||   |    |    ||  |  |    | | |       | |||| |||
TGGACTACCATGGTTGTGATTTCTTCCCTGAGCGATGGTTTGATCGTGTGGTGGTGCTTCAAACCGACAACTCTGTGTTGTATGACCGCCTGAGTACAAGgtagtgatgtttttgctcagggcatcatct--tcttggtttcttcatacccttccacccatcattttggctcaaaaaattgtttgt---tgtgtggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9203615|gb|BE329839.1|BE329839
EST:     GTTGTACTTCAAACTGATAACACCATTTTGTATGATCGTTTGAGTAGGAG                         AGGGTACAAAGATTCAAAGCTTTCAAACAATATTGAATGTGAAATCTTCCA
genomic: GTTGTACTTCAAACTGATAACACCATTTTGTATGATCGTTTGAGTAGGAGgtatggaagc ... tatgtgacagAGGGTACAAAGATTCAAAGCTTTCAAACAATATTGAATGTGAAATCTTCCA
EST: gi|254331788|gb|GR843638.1|GR843638
EST:     GTTGTACTTCAAACTGATAACACCATTTTGTATGATCGTTTGAGTAGGAG                         AGGGTACAAAGATTCAAAGCTTTCAAACAATATTGAATGTGAAATCTTCCA
genomic: GTTGTACTTCAAACTGATAACACCATTTTGTATGATCGTTTGAGTAGGAGgtatggaagc ... tatgtgacagAGGGTACAAAGATTCAAAGCTTTCAAACAATATTGAATGTGAAATCTTCCA
EST: gi|254331789|gb|GR843639.1|GR843639
EST:     GTTGTACTTCAAACTGATAACACCATTTTGTATGATCGTTTGAGTAGGAG                         AGGGTACAAAGATTCAAAGCTTTCAAACAATATTGAATGTGAAATCTTCCA
genomic: GTTGTACTTCAAACTGATAACACCATTTTGTATGATCGTTTGAGTAGGAGgtatggaagc ... tatgtgacagAGGGTACAAAGATTCAAAGCTTTCAAACAATATTGAATGTGAAATCTTCCA
EST: gi|17022576|gb|BM093610.1|BM093610
EST:     GTTGTACTTCAAACTGATAACACCATTTTGTATGATCGTTTGAGTAGGAG                         AGGGTACAAAGATTCAAAGCTTTCAAACAATATTGAATGTGAAATCTTCCA
genomic: GTTGTACTTCAAACTGATAACACCATTTTGTATGATCGTTTGAGTAGGAGgtatggaagc ... tatgtgacagAGGGTACAAAGATTCAAAGCTTTCAAACAATATTGAATGTGAAATCTTCCA
EST: gi|298175481|gb|HO015114.1|HO015114
EST:     GTTGTACTTCAAACTGATAACACCATTTTGTATGATCGTTTGAGTAGGAG                         AGGGTACAAAGATTCAAAGCTTTCAAACAATATTGAATGTGAAATCTTCCA
genomic: GTTGTACTTCAAACTGATAACACCATTTTGTATGATCGTTTGAGTAGGAGgtatggaagc ... tatgtgacagAGGGTACAAAGATTCAAAGCTTTCAAACAATATTGAATGTGAAATCTTCCA