Sequence
atgc intronic sequence ATGC exonic sequenceTGAAGCAGGGAAGATCTCAAAAGAAATTCAGAAAGTGGAGAAGCGAAGGATTGTTAAAAGCACACTTTGTAATGATAGAAGTTCCAGAAGTCACTGCATGgtatgtggtagctttggaggatggttctgattaaatctataaagttcccttgattggtaactgattacatgtattctattctgatcag
Basic information
species | Glycine max |
transcript | GLYMA10G32610.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G32610.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G062084_T01 (Zea mays), 5'ss of exon 2
TGAAGCAGGGAAGATCTCAAAAGAAATTCAGAAAGTGGAGAAGCGAAGGATTGTTAAAAGCACACTTTGTAATGATAGAAGTTCCAGAAGTCACTGCATGgtatgtggtagctttggaggatggttctgattaaatctataaagttcccttgattggtaactgattaca-tgtattctattctgatcag
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TGAACCTGGAAGGATATCAAGAGAAGTTTCTAAAGTTGAAAAGCGAAGAACTGTGAAGAGCACACTTTGTAATGAGAGAAGTTCACGGAGCCATTGCGTGgtttgttgca--ttcagccaccagcactgtcagcattcat----ttttaaaaaatcaagctttttcacactatgctttgcatctatag-
upper sequence: GLYMA10G32610.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G062084_T02 (Zea mays), 5'ss of exon 2
--------------------------------------------------------TGAAGCAGGGAAGATCTCAAAAGAAATTCAGAAAGTGGAGAAGCGAAGGATTGTTAAAAGCACACTTTGTAATGATAGAAGTTCCAGAAGTCACTGCATGgtatgtggtagctttggaggatggttctgattaaatctataaagttcccttgattggtaactgattaca-tgtattctattctgatcag
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GCGAGACTAGAAGTAATGGGGAAGAAAGCTAAGAATGCAACCTATATATCTGGAAATGAACCTGGAAGGATATCAAGAGAAGTTTCTAAAgttgaaaagcgaagaactgtgaagagcacactttgtaatgagagaagttcacggagccattgcgtggtttgttgca--ttcagccaccagcactgtcagcattcat----ttttaaaaaatcaagctttttcacactatgctttgcatctatag-
upper sequence: GLYMA10G32610.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G14330.1 (Arabidopsis thaliana), 5'ss of exon 2
TGAAGCAGGGAAGATCTCAAAAGAAATTCAGAAAGTGGAGAAGCGAAGGATTGTTAAAAGCACACTTTGTAATGATAGAAGTTCCAGAAGTCACTGCATGgtatg--tggtagctttggaggatggttctgattaaatctataaagttcccttgattggtaactgattacatgtattctattctgatcag--
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AGAGGCTGGGAAGATTTCTAAAGAAATTGTCAAAGTGGAGAAACGGAGAATTGTGAAGAGTACACTTTGTAACGAAAGAAGTTCTCGGAGTCACTGCATTgtaagaacgatcttcttgattgatgtgtatgcatagctttatgcagcttatctctgttttaacttacta-gtgtggttgtttctttttgtag
upper sequence: GLYMA10G32610.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv05s0049g01350.t01 (Vitis vinifera), 5'ss of exon 2
TGAAGCAGGGAAGATCTCAAAAGAAATTCAGAAAGTGGAGAAGCGAAGGATTGTTAAAAGCACACTTTGTAATGATAGAAGTTCCAGAAGTCACTGCATGgtatgtggtagctttggaggat----ggttctgattaaatctataaagttcccttgattggtaa--ctgattacatgtattctattctgatcag
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TGAAGCCGGAAAGATATCTAAAGAGATCCAAAAAGTGGAGAAGCGAAGAATTGTTAAAAGCACACTCTGTAATGACAGAAGCTCCAGAAGCCACTGCATGgtctg-aatctcttaaaactttattaggttatgac-aacctttccaaatcttcttgctttataaacttaatcttctgtgtgc-atttgcatag-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7588672|gb|AW704462.1|AW704462EST: TTGTTAAAAGCACACTTTGTAATGATAGAAGTTCCAGAAGTCACTGCATG GTAATCCTTGATGTCCCAACTGTGGGAGGGCGGCTAATGCTTGTGGACATG
genomic: TTGTTAAAAGCACACTTTGTAATGATAGAAGTTCCAGAAGTCACTGCATGgtatgtggta ... ttctgatcagGTAATCCTTGATGTCCCAACTGTGGGAGGGCGGCTAATGCTTGTGGACATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAAGCAGGGAAGATCTCAAAAGAAATTCAGAAAGTGGAGAAGCGAAGGATTGTTAAAAGCACACTTTGTAATGATAGAAGTTCCAGAAGTCACTGCATGgtatgtggtagctttggaggatggttctgattaaatctataaagttcccttgattggtaactgattacatgtattctattctgatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT