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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAGATGGGATCTTGGAATTGGAGCCAATGAACTCTTACAATCGTCTTCTATTGCATCGCCTTGCTGAAATATTTGGgtatttttctcatgacttttgttttagtcaatttcaaagttcctttctggtttcattttgaatgtgtttactgttcttttatttgatggttttataactggtgccag

Basic information

species Glycine max
transcript GLYMA10G31320.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11411987|gb|BF423998.1|BF423998
EST:     ATGAACTCTTACAATCGTCTTCTATTGCATCGCCTTGCTGAAATATTTGG                         GTTTGCACATGAATCTGTTGGCGAAGGAGATGATCGCCATTTGATTCTGGA
genomic: ATGAACTCTTACAATCGTCTTCTATTGCATCGCCTTGCTGAAATATTTGGgtatttttct ... ctggtgccagGTTTGCACATGAATCTGTTGGCGAAGGAGATGATCGCCATTTGATTCTGGA
EST: gi|298188529|gb|HO035222.1|HO035222
EST:     ATGAACTCTTACGATCGTCTTCTATTGCATCGCCTTGCTGAAATATTTGG                         GTTTGCACATGAATCTGTTGGCGAAGGAGATGATCGCCATTTGATTCTGGA
genomic: ATGAACTCTTACAATCGTCTTCTATTGCATCGCCTTGCTGAAATATTTGGgtatttttct ... ctggtgccagGTTTGCACATGAATCTGTTGGCGAAGGAGATGATCGCCATTTGATTCTGGA
EST: gi|298177235|gb|HO023482.1|HO023482
EST:     ATGAACTCTTACAATCGTCTTCTATTGCATCGCCTTGCTGAAATATTTGG                         GTTTGCACATGAATCTGTTGGCGAAGGAGATGATCGCCATTTGATTCTGGA
genomic: ATGAACTCTTACAATCGTCTTCTATTGCATCGCCTTGCTGAAATATTTGGgtatttttct ... ctggtgccagGTTTGCACATGAATCTGTTGGCGAAGGAGATGATCGCCATTTGATTCTGGA
EST: gi|27809203|gb|CB063625.1|CB063625
EST:     ATGAACTCTTACAATCGTCTTCTATTGCATCGCCTTGCTGAAATATTTGG                         GTTTGCACATGAATCTGTTGGCGAAGGAGATGATCGCCATTTGATTCTGGA
genomic: ATGAACTCTTACAATCGTCTTCTATTGCATCGCCTTGCTGAAATATTTGGgtatttttct ... ctggtgccagGTTTGCACATGAATCTGTTGGCGAAGGAGATGATCGCCATTTGATTCTGGA
EST: gi|193650376|gb|FK597221.1|FK597221
EST:     ATGAACTCTTACAATCGTCTTCTATTGCATCGCCTTGCTGAAATATTTGG                         GTTTGCACATGAATCTGTTGGCG
genomic: ATGAACTCTTACAATCGTCTTCTATTGCATCGCCTTGCTGAAATATTTGGgtatttttct ... ctggtgccagGTTTGCACATGAATCTGTTGGCG