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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGGTTCTAAGAGAAGCTGCTAATGGCGGACGGGAAGCAGAACGCGTCAAGCTCAAATTGGAAATTAAAGTCGAAGAGgttttttttttgccacctcaataggatttctattagttttctcagtttttgtctcatcgtgattttgtttttatactag

Basic information

species Glycine max
transcript GLYMA10G31310.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193571400|gb|FK529103.1|FK529103
EST:     GACGGGAAGCAGAACGCGTCAAGCTCAAATTGGAAATTAAAGTCGAAGAG                         CTTTCTGATTATGACAAAGAAGGTTCTATTT-GCGTGTTCGTGGAAAGAAC
genomic: GACGGGAAGCAGAACGCGTCAAGCTCAAATTGGAAATTAAAGTCGAAGAGgttttttttt ... tttatactagCTTTCTGATTATGACAAAGAAGGTTCTATTTTGCGTGTTCGTGGAAAGAAC
EST: gi|193694789|gb|FK634259.1|FK634259
EST:     GACGGGAAGCAGAACGCGTCAAGCTCAAATTGGAAATTAAAGTCGAAGAG                         CTTTCTGATTATGACAAAGAAGGTTCTATTTTGCGTGTTCGTGGAAAGAAC
genomic: GACGGGAAGCAGAACGCGTCAAGCTCAAATTGGAAATTAAAGTCGAAGAGgttttttttt ... tttatactagCTTTCTGATTATGACAAAGAAGGTTCTATTTTGCGTGTTCGTGGAAAGAAC
EST: gi|207817396|gb|GD789357.1|GD789357
EST:     GACGGGAAGCAGAACGCGTCAAGCTCAAATTGGAAATTAAAGTCGAAGAG                         CTTTCTGATTATGACAAAGAAGGTTCTATTTTGCGTGTTCGTGGAAAGAAC
genomic: GACGGGAAGCAGAACGCGTCAAGCTCAAATTGGAAATTAAAGTCGAAGAGgttttttttt ... tttatactagCTTTCTGATTATGACAAAGAAGGTTCTATTTTGCGTGTTCGTGGAAAGAAC
EST: gi|208189229|gb|GD983633.1|GD983633
EST:     GACGGGAAGCAGAACGCGTCAAGCTCAAATTGGAAATTAAAGTCGAAGAG                         CTTTCTGATTATGACAAAGAAGGTTCTATTTTGCGTGTTCGTGGAAAGAAC
genomic: GACGGGAAGCAGAACGCGTCAAGCTCAAATTGGAAATTAAAGTCGAAGAGgttttttttt ... tttatactagCTTTCTGATTATGACAAAGAAGGTTCTATTTTGCGTGTTCGTGGAAAGAAC
EST: gi|9898819|gb|BE607787.1|BE607787
EST:     GGGAAGCAGAACGCGTCAAGCTCAAATTGGAAATTAAAGTCGAAGAG                         CTTTCTGATTATGACAAAGAAGGTTCTATTTTGCGTGTTCGTGGAAAGAAC
genomic: GGGAAGCAGAACGCGTCAAGCTCAAATTGGAAATTAAAGTCGAAGAGgttttttttt ... tttatactagCTTTCTGATTATGACAAAGAAGGTTCTATTTTGCGTGTTCGTGGAAAGAAC
EST: gi|208302678|gb|GE097895.1|GE097895
EST:     GACGGGAAGCAGAACGCGTCAAGCTCAAATTGGAAATTAAAGTCGAAGAG                         CTTTCTGATTATGACAAAGAAGGTTCTATTTTGCGTGTTCGTGGAAAGAAC
genomic: GACGGGAAGCAGAACGCGTCAAGCTCAAATTGGAAATTAAAGTCGAAGAGgttttttttt ... tttatactagCTTTCTGATTATGACAAAGAAGGTTCTATTTTGCGTGTTCGTGGAAAGAAC
EST: gi|208316633|gb|GE115779.1|GE115779
EST:     ACGGGAAGCAGAACGCGTCAAGCTCAAATTGGAAAATTAAAGTCGAAGAG                         CTTTCTGATCATGACAAAGAAGGTTCTATTTTGCGTGTTCGTGGAAAGAAC
genomic: ACGGGAAGCAGAACGCGTCAAGCTCAAATTGG-AAATTAAAGTCGAAGAGgttttttttt ... tttatactagCTTTCTGATTATGACAAAGAAGGTTCTATTTTGCGTGTTCGTGGAAAGAAC
EST: gi|193608468|gb|FK557931.1|FK557931
EST:     GACGGGAAGCAGAACGCGTCAAGCTCAAATTGGAAATTAAAGTCGAAGAG                         CTTTCTGATTATGACAAAGAAGGTTCTATTTTGCGTGTTCGTGGAAAGAAC
genomic: GACGGGAAGCAGAACGCGTCAAGCTCAAATTGGAAATTAAAGTCGAAGAGgttttttttt ... tttatactagCTTTCTGATTATGACAAAGAAGGTTCTATTTTGCGTGTTCGTGGAAAGAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAGGTTCTAAGAGAAGCTGCTAATGGCGGACGGGAAGCAGAACGCGTCAAGCTCAAATTGGAAATTAAAGTCGAAGAGgttttttttttgccacctcaataggatttctattagttttctcagtttttgtctcatcgtgattttgtttttatactag

- - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA