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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGATTATCGGCTCTTCTGTGGGGATCTTGGTAACGAGGTGAATGATGATGTTCTCTCAAAAGCATTTTCACGATTTCCTTCCTTTAACATGGCACGAgtaagtgggttctcatctaactcgaattctctatatgtttagttatgattgtcgtgctagtgtgagcattttttatttcctgttcagatttttgtttgaa...

Basic information

species Glycine max
transcript GLYMA10G30900.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30900.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G068255_T01 (Zea mays), 5'ss of exon 2
ATGATTATCGGCTCTTCTGTGGGGATCTTGGTAACGAGGTGAATGATGATGTTCTCTCAAAAGCATTTTCACGATTTCCTTCCTTTAACATGGCACGAgtaagtgggttctcatctaactcgaattctctatatgtttagttatgattgtcgtgctagtgtgagcattttttatttcctgttcagatttttgtt-tgaa---
| || || ||||| |||||||| ||||| || ||||| || ||||||||||||||||| |||||||||||||| ||||| ||||| ||||||||| | ||||  ||   | ||| |   || ||       ||| | |||  |   || |    | | |   |  ||| |||      |  || ||  |||||| || |   
ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATGTTCTCTCCAAAGCATTTTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaacgg---cccatttttatccaaaaaagcttatttgtagcaaaacttattcaacga-tccaattattgtttgccaggttctctgaaatttgttatgtaata

upper sequence: GLYMA10G30900.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G068255_T02 (Zea mays), 5'ss of exon 1
--ATGATTATCGGCTCTTCTGTGGGGATCTTGGTAACGAGGTGAATGATGATGTTCTCTCAAAAGCATTTTCACGATTTCCTTCCTTTAACATGGCACGAgtaagtgggttctcatctaactcgaattctctatatgtttagttatgattgtcgtgctagtgtgagcattttttatttcctgttcagatttttgtt-tgaa---
  | || || ||||| |||||||| ||||| || ||||| || ||||||||||||||||| |||||||||||||| ||||| ||||| ||||||||| | ||||  ||   | ||| |   || ||       ||| | |||  |   || |    | | |   |  ||| |||      |  || ||  |||||| || |   
AGACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATGTTCTCTCCAAAGCATTTTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaacgg---cccatttttatccaaaaaagcttatttgtagcaaaacttattcaacga-tccaattattgtttgccaggttctctgaaatttgttatgtaata

upper sequence: GLYMA10G30900.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G016106_T02 (Zea mays), 5'ss of exon 1
--ATGATTATCGGCTCTTCTGTGGGGATCTTGGTAACGAGGTGAATGATGATGTTCTCTCAAAAGCATTTTCACGATTTCCTTCCTTTAACATGGCACGAgtaagtgggttctcatctaactcgaattctctatatgtttagttatgattgtcgtgctagt--gtgagcattttttatttcctgtt--cagatttttgtttgaa-
  | || || ||||| |||||||| ||||| || ||||| || |||||||||||||| || |||||||| ||||| ||||| ||||| ||||||||| | |||| |    || | | | |  | ||     ||| |||  ||  |   ||||    | |     | |   || |  | | ||| ||  || ||| || |  |   
AGACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaata---tccctttttatccaaaaggcttatttgt--agcaaaacttgttcaacaatccaattattgttatgcaatacctattgtcaaattcttttaggggc

upper sequence: GLYMA10G30900.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G016106_T01 (Zea mays), 5'ss of exon 2
ATGATTATCGGCTCTTCTGTGGGGATCTTGGTAACGAGGTGAATGATGATGTTCTCTCAAAAGCATTTTCACGATTTCCTTCCTTTAACATGGCACGAgtaagtgggttctcatctaactcgaattctctatatgtttagttatgattgtcgtgctagt--gtgagcattttttatttcctgtt--cagatttttgtttgaa-
| || || ||||| |||||||| ||||| || ||||| || |||||||||||||| || |||||||| ||||| ||||| ||||| ||||||||| | |||| |    || | | | |  | ||     ||| |||  ||  |   ||||    | |     | |   || |  | | ||| ||  || ||| || |  |   
ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaata---tccctttttatccaaaaggcttatttgt--agcaaaacttgttcaacaatccaattattgttatgcaatacctattgtcaaattcttttaggggc

upper sequence: GLYMA10G30900.2 (Glycine max), 5'ss of exon 3
lower sequence: AT3G04500.1 (Arabidopsis thaliana), 5'ss of exon 3
ATGATTATCGGCTCTTCTGTGGGGATCTTGGTAACGAGGTGAATGATGATGTTCTCTCAAAAGCATTTTCACGATTTCCTTCCTTTAACATGGCACGAgtaagtgggttctcatctaactcgaattctctata-tgtttagttatgattgtcgtgctagtgtgagcattttttatttcctgttcagatttttgtttgaa---
|||| ||||| || |||||||| |||||||| ||||| ||||||||||||||||| || ||||||||| |  |||| ||  |||| || |||||    |||| || ||     |||    |   |   || || || ||| | ||   ||   | |||   ||| ||| | ||        || ||   | || ||| |   
ATGACTATCGTCTGTTCTGTGGTGATCTTGGGAACGAAGTGAATGATGATGTTCTTTCCAAAGCATTTGCTAGATTCCCCACCTTCAATATGGCCAAGgtaactgtgtatatctctcctccttttcggctttagtgattattcatatctggtttccta---tgaacatatatttgagaacatt-agtcatgtgattgtagtc

upper sequence: GLYMA10G30900.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv09s0018g01710.t01 (Vitis vinifera), 5'ss of exon 3
ATGATTATCGGCTCTTCTGTGGGGATCTTGGTAACGAGGTGAATGATGATGTTCTCTCAAAAGCATTTTCACGATTTCCTTCCTTTAACATGGCACGAgtaagtgggttctcatctaactcgaattctctatatgtttagttatgattgtcgtgctagtgtgag-cattttttatttcctgttcagatttttgtttgaa--------
||||||||||  | || ||||| |||||||| || |||||||| ||||||||||| ||||||||||||||||||||||||||||| || |||||  ||||||||    |   || |  ||| | ||   ||||  |||  |||| |  |     ||| | | ||  ||| |||  ||  |||   | | ||| |||| |        
ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagt----ttatatttccctcaagttt--tatacttttttttatta--ggaactctaatattagatattgtttgcttggtgtattgttgttt-tttgcatatcctct

upper sequence: GLYMA10G30900.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0036g00630.t01 (Vitis vinifera), 5'ss of exon 3
ATGATTATCGGCTCTTCTGTGGGGATCTTGGTAACGAGGTGAATGATGATGTTCTCTCAAAAGCATTTTCACGATTTCCTTCCTTTAACATGGCACGAgtaagtgggttctcatctaactcgaattctctatatgtttagttatgattgtcgtgctagtgtg-agcattt-tttatttcctgttcagatttttgtttgaa--
||||||||||  | || ||||| |||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||   |||||||    |   || | | || | |||| ||  | ||   |  |     |  |  || |    | |||||  ||  | | || | || ||||||        
ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAATGATGATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCTAAAgtaagt----ttctatttcattcaagttctttaccttttctttattaggaattctattattagatatcatttgcttggtgcatggtgagctttttgcccattct

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14009094|gb|BG725698.1|BG725698
EST:     ATGTTCTCTCAAAAGCATTTTCACGATTTCCTTCCTTTAACATGGCACGA                         GTTGTCAGAGACAAGCGGACTGGTAAAACAAA
genomic: ATGTTCTCTCAAAAGCATTTTCACGATTTCCTTCCTTTAACATGGCACGAgtaagtgggt ... tcttgactagGTTGTCAGAGACAAGCGGACTGGTAAAACAAA
EST: gi|22523081|gb|BU081892.1|BU081892
EST:     ATGTTCTCTCAAAAGCATTTTCACGATTTCCTTCCTTTAACATGGCACGA                         GTTGTCAGAGACAAGCGGACTGGTAAAACAAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTCTCAAAAGCATTTTCACGATTTCCTTCCTTTAACATGGCACGAgtaagtgggt ... tcttgactagGTTGTCAGAGACAAGCGGACTGGTAAAACAAAAGGTTATGGATTTGTGAGC
EST: gi|254348659|gb|GR852338.1|GR852338
EST:     ATGTTCTCTCAAAAGCATTTTCACGATTTCCTTCCTTTAACATGGCACGA                         GTTGTCAGAGACAAGCGGACTGGGTAAAACAAAAGGTTATGGGATTTGTGA
genomic: ATGTTCTCTCAAAAGCATTTTCACGATTTCCTTCCTTTAACATGGCACGAgtaagtgggt ... tcttgactagGTTGTCAGAGACAAGCGGACTGG-TAAAACAAAAGGTTATGG-ATTTGTGA
EST: gi|15664653|gb|BI702024.1|BI702024
EST:     ATGTTCTCTCAAAAGCATTTTCACGATTTCCTTCCTTTAACATGGCACGA                         GTTGTCAGAGACAAGCGGACTGGTAAAACAAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTCTCAAAAGCATTTTCACGATTTCCTTCCTTTAACATGGCACGAgtaagtgggt ... tcttgactagGTTGTCAGAGACAAGCGGACTGGTAAAACAAAAGGTTATGGATTTGTGAGC
EST: gi|193355864|gb|FK323473.1|FK323473
EST:     ATGTTCTCTCAAAAGCATTTTCACGATTTCCTTCCTTTAACATGGCACGA                         GTTGTCAGAGACAAGCGGACTGGTAAAACAAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTCTCAAAAGCATTTTCACGATTTCCTTCCTTTAACATGGCACGAgtaagtgggt ... tcttgactagGTTGTCAGAGACAAGCGGACTGGTAAAACAAAAGGTTATGGATTTGTGAGC
EST: gi|207809104|gb|GD781738.1|GD781738
EST:     ATGTTCTCTCAAAAGCATTTTCACGATTTCCTTCCTTTAACATGGCACGA                         GTTGTCAGAGACAAGCGGACTGGTAAAACAAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTCTCAAAAGCATTTTCACGATTTCCTTCCTTTAACATGGCACGAgtaagtgggt ... tcttgactagGTTGTCAGAGACAAGCGGACTGGTAAAACAAAAGGTTATGGATTTGTGAGC
EST: gi|6341837|gb|AW164661.1|AW164661
EST:     ATGTTCTCTCAAAAGCATTTTCACGATTTCCTTCCTTTAACATGGCACGA                         GTTGTCAGAGACAAGCGGACTGGTAAAACAAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTCTCAAAAGCATTTTCACGATTTCCTTCCTTTAACATGGCACGAgtaagtgggt ... tcttgactagGTTGTCAGAGACAAGCGGACTGGTAAAACAAAAGGTTATGGATTTGTGAGC