1 5' 3' | 2 5' 3' | 3 5' 3' |
GAACCAATCAAGGCTGCAGAGAAATCTCATGTACCTAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAGgtacatgcctattttcataatagtaatcactataactatacaagtactcactttgaaagcactaacttgagaagatgttggatacattttaatcaatgaaatattgcaatgatacataacataagcttcatttaacatcatactcttggggatatcactacag
species | Glycine max |
transcript | GLYMA10G30650.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAG TATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAAEST: gi|208239853|gb|GE038155.1|GE038155
genomic: TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAGgtacatgcct ... atcactacagTATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAA
EST: TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAG TATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATEST: gi|7146715|gb|AW508637.1|AW508637
genomic: TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAGgtacatgcct ... atcactacagTATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACAT
EST: TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAG TATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAAEST: gi|298167597|gb|HO012860.1|HO012860
genomic: TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAGgtacatgcct ... atcactacagTATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAA
EST: TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAG TATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAAEST: gi|298167848|gb|HO013111.1|HO013111
genomic: TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAGgtacatgcct ... atcactacagTATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAA
EST: TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAG TATCCCTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAAEST: gi|9564353|gb|BE473862.1|BE473862
genomic: TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAGgtacatgcct ... atcactacagTATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAA
EST: TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAG TATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAAEST: gi|298173919|gb|HO017255.1|HO017255
genomic: TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAGgtacatgcct ... atcactacagTATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAA
EST: TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAG TATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAAEST: gi|24136599|gb|BU927109.1|BU927109
genomic: TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAGgtacatgcct ... atcactacagTATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAA
EST: TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAG TATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAAEST: gi|7147015|gb|AW508937.1|AW508937
genomic: TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAGgtacatgcct ... atcactacagTATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAA
EST: TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAG TATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAAEST: gi|298185599|gb|HO030812.1|HO030812
genomic: TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAGgtacatgcct ... atcactacagTATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAA
EST: TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAG TATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAAEST: gi|18040414|gb|BM308708.1|BM308708
genomic: TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAGgtacatgcct ... atcactacagTATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAA
EST: TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAG TATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAAEST: gi|15812875|gb|BI785150.1|BI785150
genomic: TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAGgtacatgcct ... atcactacagTATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAA
EST: TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAG TATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAA
genomic: TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAGgtacatgcct ... atcactacagTATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACCAATCAAGGCTGCAGAGAAATCTCATGTACCTAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAGgtacatgcctattttcataatagtaatcactataactatacaagtactcactttgaaagcactaacttgagaagatgttggatacattttaatcaatgaaatattgcaatgatacataacataagcttcatttaacatcatactcttggggatatcactacag
- - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - GCTGAT