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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGTTCGTTGAATCATGCCAGCGCCTTCGCATAATGAAAGGTTCTGAGGCTATCGGCCTTGgttagtcatcatacaacttactcttaattcattactataagtcagaagaaaattattatcctaaaattgtttatttcttattcacag

Basic information

species Glycine max
transcript GLYMA10G30440.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30440.3 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os12g40890.1 (Oryza sativa), 5'ss of exon 4
AATGTTCGTTGAATCATGCCAGCGCCTTCGCATAATGAAAGGTTCTGAGGCTATCGGCCTTGgttagt-catcatacaacttactctta-------attcattactataagtcagaagaaaatt----attatcctaaaattgtttatttcttattcacag------------------------------------------
 ||||| |||||||||||| |||||||| | ||||||||||| || || ||||| ||||||||| ||| |||   |    ||| |  ||       |||   | || |  ||  ||    || |     ||    | || |||  |||   ||| | ||||                                          
GATGTTTGTTGAATCATGCAAGCGCCTTAGGATAATGAAAGGATCAGAAGCTATTGGCCTTGgtcagtgcatatcaagttttatttctacatacaaattagctcctttgggtttgattttaagttggggtttaatttaagttggatatcagttactgacagaacagtgaaatataatatattttttgttttgaattgtttcag

upper sequence: GLYMA10G30440.3 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0081g00010.t01 (Vitis vinifera), 5'ss of exon 4
AATGTTCGTTGAATCATGCCAGCGCCTTCGCATAATGAAAGGTTCTGAGGCTATCGGCCTTGgttagtcatcatacaacttactcttaat--tcattactataagtcagaagaaaattattatc-ctaaaattg--tttatttcttattcacag----------------------
 |||||||| ||||| ||| ||||| | |||||||||||||| || ||||| ||||| ||||||||||||| ||| | ||| ||   | |  | || | |||   |  |   |||||| | | | ||     ||  || || |||| |                            
GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGCCATCGGACTTGgttagtcat-atata-cttgctgcaactcatgatcattatggttatgttcaaaattttcaccacttttgctgacttaatctcttgtatttgcttgattaatcaatggcatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207831482|gb|GD803412.1|GD803412
EST:     ATCATGCCAGCGCCTTCGCATAATGAAAGGTTCTGAGGCTATCGGCCTTG                         CACCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGAAGTGATTTTAGGG
genomic: ATCATGCCAGCGCCTTCGCATAATGAAAGGTTCTGAGGCTATCGGCCTTGgttagtcatc ... ttattcacagCACCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGAAGTGATTTTAGGG
EST: gi|5606447|gb|AI900481.1|AI900481
EST:     ATCATGCCAGCGCCTTCGCATAATGAAAGGTTCTGAGGCTATCGGCCTTG                         CACCAAGAGCCGTGG
genomic: ATCATGCCAGCGCCTTCGCATAATGAAAGGTTCTGAGGCTATCGGCCTTGgttagtcatc ... ttattcacagCACCAAGAGCCGTGG
EST: gi|12689680|gb|BG156016.1|BG156016
EST:     ATCATGCCAGCGCCTTCGCATAATGAAAGGTTCTGAGGCTATCGGCCTTG                         CACCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGAAGTGATTTTAGGG
genomic: ATCATGCCAGCGCCTTCGCATAATGAAAGGTTCTGAGGCTATCGGCCTTGgttagtcatc ... ttattcacagCACCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGAAGTGATTTTAGGG
EST: gi|31309253|gb|CD394456.1|CD394456
EST:     ATCATGCCAGCGCCTTCGCATAATGAAAGGTTCTGAGGCTATCGGCCTTG                         CACCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGAAGTGATTTTAGGG
genomic: ATCATGCCAGCGCCTTCGCATAATGAAAGGTTCTGAGGCTATCGGCCTTGgttagtcatc ... ttattcacagCACCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGAAGTGATTTTAGGG
EST: gi|10708992|gb|BF008777.1|BF008777
EST:     ATCATGCCAGCGCCTTCGCATAATGAAAGGTTCTGAGGCTATCGGCCTTG                         CACCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGC
genomic: ATCATGCCAGCGCCTTCGCATAATGAAAGGTTCTGAGGCTATCGGCCTTGgttagtcatc ... ttattcacagCACCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGC
EST: gi|8402213|gb|BE057847.1|BE057847
EST:     ATCATGCCAGCGCCTTCGCATAATGAAAGGTTCTGAGGCTATCGGCCTTG                         CACCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGAAGTGATTTTAGGG
genomic: ATCATGCCAGCGCCTTCGCATAATGAAAGGTTCTGAGGCTATCGGCCTTGgttagtcatc ... ttattcacagCACCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGAAGTGATTTTAGGG