Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGGTCGTGTTGTGAGGCAAGCCTGCGCCGCCTTGGTGTGGAATATATTGATCTCTATTATCCGCACAGGATTGACACAACAGTACCAATTGAGGAAACTgtaagtggtacaatacaatgagtcagacaacattggtgtcttttatagttttatttggtgttggatgaggttgctatcggtttgtattttgaatgaatgaatgaatgaatag

Basic information

species Glycine max
transcript GLYMA10G30360.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30360.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0030g01980.t01 (Vitis vinifera), 5'ss of exon 3
TCGGTCGTGTTGTGAGGCAAGCCTGCGCCGCCTTGGTGTGGAATATATTGATCTCTATTATCCGCACAGGATTGACACAACAGTACCAATTGAGGAAACTgtaagtggtacaatacaatg-----agtcagacaacattggtgtcttttatagttttatttggtgttgg-atgaggttgctatcggtttgtat-tttgaatgaatgaatgaatgaatag-----------------------------
 || || |||||||| || ||||||   || |||| ||||||||| ||||||||||||||||  ||| || ||||||   |||||||||| ||||||||||| |||| |  | || | |      | |   |    |||  |   ||||  |      ||| ||  |||  |||  ||    ||   ||| |  ||| ||| | |  |  |     |                               
CCGCTCCTGTTGTGAAGCTAGCCTGAAACGTCTTGATGTGGAATACATTGATCTCTATTATCAACACCGGGTTGACAAGTCAGTACCAATAGAGGAAACTgtgagtgttgtattatattttctttatttttatttaatttttactttttccaaaccatttttgtaatggtgtgatcttttcctctacttggaagtttaaatcatttcactagcacgttccttaaaaatatatatttgcaataatgtag

upper sequence: GLYMA10G30360.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0030g02050.t01 (Vitis vinifera), 5'ss of exon 3
TCGGTCGTGTTGTGAGGCAAGCCTGCGCCGCCTTGGTGTGGAATATATTGATCTCTATTATCCGCACAGGATTGACACAACAGTACCAATTGAGGAAACTgtaagtggtacaatacaatgagtc--agacaacattggtgtcttttatagttttat-ttggtgttggatgaggttgctatcggtttgtattttgaatgaatgaatgaatgaatag------------------------------
||| || | ||||| ||| ||| ||   ||  ||| ||||||||||||||||||||| ||||  ||| || |||||| | ||||||| || |||||||||||||||| |||| |   |    |   |   ||   |    | || |  |  |  || ||     ||||      |  |  | | ||  | |||  || | |  |  | |   |                                
TCGCTCCTCTTGTGTGGCTAGCTTGAAACGTATTGATGTGGAATATATTGATCTCTACTATCAACACCGGGTTGACAGATCAGTACCCATAGAGGAAACTgtaagtgttacatttttactctttttaatgaattcttaaattttcttcaactccatgttcagaatggacttttctttttactgcttcaagtttacattattttactagtaccttctttaaaagtcttttttgtgcaataacatag

upper sequence: GLYMA10G30360.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0030g01970.t01 (Vitis vinifera), 5'ss of exon 3
TCGGTCGTGTTGTGAGGCAAGCCTGCGCCGCCTTGGTGTGGAATATATTGATCTCTATTATCCGCACAGGATTGACACAACAGTACCAATTGAGGAAACTgtaagtggtacaatacaatgagtcagacaac---attggtgtcttttatagttttatttggtgttggatgaggttgctatcggtttgtattttgaatgaatgaatgaatgaatag-----------------------------
||| || ||||||||||| ||||||    | |||| ||||||||| ||||||||||||||||  |||||||||||||   ||||||| || ||||||||||| |||| || | || | |   |      |    |||  ||| ||||  |    | ||||   |   ||||  ||    || | ||| | ||| ||| | |  |  |    ||                               
TCGCTCCTGTTGTGAGGCTAGCCTGAAATGTCTTGATGTGGAATACATTGATCTCTATTATCAACACAGGATTGACAAGTCAGTACCTATAGAGGAAACTgtgagtgttatattatattttctttttttatttaatttttgttttttcaaaccatttttgtaatgttatgatcttttgttctgcttgaagttttaatcatttcactagcacatgccttaaaaatatacatccacaataatgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209724026|gb|BW671620.1|BW671620
EST:     ATCTCTATTATCCGCACAGGATTGACACAACAGTACCAATTGAGGAAACT                         ATGGGAGAGCTTAAAAAGTTGGTTGAAGAGGGAAAAGTAAAATACATAGGA
genomic: ATCTCTATTATCCGCACAGGATTGACACAACAGTACCAATTGAGGAAACTgtaagtggta ... gaatgaatagATGGGAGAGCTTAAAAAGTTGGTTGAAGAGGGAAAAGTAAAATACATAGGA
EST: gi|15664769|gb|BI702140.1|BI702140
EST:     ATCTCTATTATCCGCACAGGATTGACACAACAGTACCAATTGAGGAAACT                         ATGGGAGAGCTTAAAAAGTTGGTTGAAGAGGGAAAAGTAAAATACATAGGA
genomic: ATCTCTATTATCCGCACAGGATTGACACAACAGTACCAATTGAGGAAACTgtaagtggta ... gaatgaatagATGGGAGAGCTTAAAAAGTTGGTTGAAGAGGGAAAAGTAAAATACATAGGA
EST: gi|151402721|gb|EV272534.1|EV272534
EST:     ATCTCTATTATCCGCACAGGATTGACACAACAGTACCAATTGAGGAAACT                         ATGGGAGAGCTTAAAAAGTTGGTTGAAGAGGGAAAAGTAAAATACATAGGA
genomic: ATCTCTATTATCCGCACAGGATTGACACAACAGTACCAATTGAGGAAACTgtaagtggta ... gaatgaatagATGGGAGAGCTTAAAAAGTTGGTTGAAGAGGGAAAAGTAAAATACATAGGA
EST: gi|192300845|gb|FG991167.1|FG991167
EST:     ATCTCTATTATCCGCACAGGATTGACACAACAGTACCAATTGAGGAAACT                         ATGGGAGAGCTTAAAAAGTTGGTTGAAGAGGGAAAAGTAAAATACATAGGA
genomic: ATCTCTATTATCCGCACAGGATTGACACAACAGTACCAATTGAGGAAACTgtaagtggta ... gaatgaatagATGGGAGAGCTTAAAAAGTTGGTTGAAGAGGGAAAAGTAAAATACATAGGA
EST: gi|42722877|gb|CK768776.1|CK768776
EST:     ATCTCTATTATCCGCACAGGATTGACACAACAGTACCAATTGAGGAAACT                         ATGGGAGAGCTTAAAAAGTTGGTTGAAGAGGGAAAAGTAAAATACATAGGA
genomic: ATCTCTATTATCCGCACAGGATTGACACAACAGTACCAATTGAGGAAACTgtaagtggta ... gaatgaatagATGGGAGAGCTTAAAAAGTTGGTTGAAGAGGGAAAAGTAAAATACATAGGA
EST: gi|298174714|gb|HO014745.1|HO014745
EST:     ATCTCTATTATCCGCACAGGATTGACACAACAGTACCAATTGAGGAAACT                         ATGGGAGAGCTTAAAAAGTTGGTTGAAGAGGGAAAAGTAAAATACATAGGA
genomic: ATCTCTATTATCCGCACAGGATTGACACAACAGTACCAATTGAGGAAACTgtaagtggta ... gaatgaatagATGGGAGAGCTTAAAAAGTTGGTTGAAGAGGGAAAAGTAAAATACATAGGA