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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTGTCTTGTTTCCAGGGTCTTTTATTCTGCCCAGAGGCAGCTTCTTTGTTGCTTCATAACTTCTGCATTTATCACATTGATGCTCCGGGGCATGAGgtcggtattagcattcttcgccttccttcccaactcatataaagctcatctaggcttttctatgtaactgtatcccttttcattttgaaatcttcaacat...

Basic information

species Glycine max
transcript GLYMA10G30270.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30270.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0030g01790.t01 (Vitis vinifera), 5'ss of exon 3
ATGTGTCTTGTTTCCAGGGTCTTTTATTCTGCCCAGAGGCAGCTTCTTTGTTGCTTCATAACTTCTGCATTTATCACATTGATGCTCCGGGGCATGAGgtcggtatta-----gcattcttcgccttccttcccaactcatataaa-gctcatctaggcttttctatgtaactg-tatcccttt--tcattttgaaatcttcaacat------------------------
|  |||||||||| || || || || || |||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||| || ||||||||| ||| |      ||||| |||    | ||    ||     ||    | | || |     ||  |   | | || | |  ||||    ||| | |    |||    |                        
ACATGTCTTGTTTTCAAGGGCTCTTCTTTTGCCCAGATGCAGCTTCTTTGCTGCTTCATAACTTCTGCATTTACCACATTGATGCTCCTGGACATGAGgtcagtactgctattgcatttttctttatgctctggaatctggattgttgtttatttgtatattcattgctcattggtgtttctttggcgattctaatggattctgtctccctttgtttaagagttcttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17021164|gb|BM092198.1|BM092198
EST:     TGTTGCTTCATAACTTCTGCATTTATCACATTGATGCTCCGGGGCATGAG                         TTGGGAGCTGATGTCATTTCTTCAGATGAACCATTGCTCTGCGTGGATGAC
genomic: TGTTGCTTCATAACTTCTGCATTTATCACATTGATGCTCCGGGGCATGAGgtcggtatta ... gttattgcagTTGGGAGCTGATGTCATTTCTTCAGATGAACCATTGCTCTGCGTGGATGAC