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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCACAGAAACATTATGAAGTTCTACACTTCTTGGGTCGATACTGCTAATAGGAACATCAACTTCGTGACTGAAATGTTCACATCCGGTACACTTAGACAgtaagttcttcagttgcaactacattatttctgttcatcattcacttttgtgcgttttagatcttgtgtagttgaattgtttcttcttcattctgatcttaacttgttttaattgtcaaatag

Basic information

species Glycine max
transcript GLYMA10G30210.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30210.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G28080.2 (Arabidopsis thaliana), 5'ss of exon 3
AGCACAGAAACATTATGAAGTTCTACACTTCTTGGGTCGATACTGCTAATAGGAACATCAACTTCGTGACTGAAATGTTCACATCCGGTACACTTAGACAgtaagttcttcagttgcaactacatt---atttctgttcatcattcacttttgtgcgttttagatctt--gtgtagttgaattgtttcttcttcattctgatcttaacttgttttaattgtcaaatag
| |||| || ||| |||||||||||| |||||||||||||||| | |||| | ||||||||||| || |||||||||||||| || || ||  | |||||||||| |  ||  |       | |     | |||| || || | | |||  |     ||||| |||||   || ||                                                    
AACACAAAAGCATCATGAAGTTCTACGCTTCTTGGGTCGATACCGATAATCGAAACATCAACTTTGTCACTGAAATGTTCACTTCTGGCACCTTGAGACAgtaagcttatctctctatctcataagtgaagttctcttgataacttactcataatgtttttatatctttcatgcag----------------------------------------------------

upper sequence: GLYMA10G30210.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G04910.1 (Arabidopsis thaliana), 5'ss of exon 3
AGCACAGAAACATTATGAAGTTCTACACTTCTTGGGTCGATACTGCTAATAGGAACATCAACTTCGTGACTGAAATGTTCACATCCGGTACACTTAGACAgtaagttcttcagttgcaactacattatttctgttcatcattcacttttgtgcgttttagatcttgtgtagttgaattgtttcttcttcattctgatcttaacttgttttaattgtcaaatag
| || |  ||||| ||||| ||||||||||||||||||||||| || ||| | || ||||| ||||| |||||| ||||||| || || ||  | |||||||||| |  ||  ||| ||  | | | |||||||    | ||   ||| ||   | ||  |   |   |   |  || | | |                                        
AACATAAGAACATCATGAAATTCTACACTTCTTGGGTCGATACCGCCAATCGAAATATCAATTTCGTCACTGAATTGTTCACTTCTGGCACCTTAAGACAgtaagattctc--ttgtaaacatact-tttctgt----cgttggttttagtttatctttaacgataacttcatttatggatacag--------------------------------------

upper sequence: GLYMA10G30210.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv05s0020g03380.t01 (Vitis vinifera), 5'ss of exon 3
AGCACAGAAACATTATGAAGTTCTACACTTCTTGGGTCGATACTGCTAATAGGAACATCAACTTCGTGACTGAAATGTTCACATCCGGTACACTTAGACAgtaagttcttca---gttgca--actaca----ttatttctgttcatcattcacttttgtgcg--ttttagatcttgtgtagttgaa---ttgtttcttcttcattc-tgatcttaacttgttttaattgtcaaatag
| ||||  ||||| ||||| ||||||||||| ||||| ||| |||| || |||||||| || || ||||| || |||||||| |||||||| ||||||||||||||     |   ||| ||  | ||         ||| | ||  |  |||| |||     |  |||  ||||| |    |||||    |||| |    |   |     || || | ||   || ||| |    |||
AACACAACAACATCATGAAATTCTACACTTCCTGGGTTGATCCTGCAAACAGGAACATTAATTTTGTGACAGAGATGTTCACCTCCGGTACTCTTAGACAgtaagtatcatacaagttccatgattatgaatgcctttttttttttttgttcaatttctcttgattttctgatctgggcatgttgagaatttgtgtaaattctgtgagcaattttcattttcatttattttgtggtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193482188|gb|FK445697.1|FK445697
EST:     AGGAACATCAACTTCGTGACTGAAATGTTCACATCCGGTACACTTAGGCA                         GTATAGGCTAAAGCACAAGAGAGTTAACATCAGAGCAGTGAAGCATTGGTG
genomic: AGGAACATCAACTTCGTGACTGAAATGTTCACATCCGGTACACTTAGACAgtaagttctt ... tgtcaaatagGTATAGGCTAAAGCACAAGAGAGTTAACATCAGAGCAGTGAAGCATTGGTG