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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGAACTCATTTTGGTGGTGGCAAGTCCACTGGGTTTGGTTTGATCTATGATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcattaaatctttctgtgtcaattgtcattataatttttttggctttgtttgaatgcttttttttttatattagatggtctgtttataaattta...

Basic information

species Glycine max
transcript GLYMA10G30200.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30200.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G04920.1 (Arabidopsis thaliana), 5'ss of exon 3
CCGAACTCATTTTGGTGGTGGCAAGTCCACTGGGTTTGGTTTGATCTATGATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcattaaatctttctgtgtcaattgtcat-tataattttt----ttggctttgtttgaatgcttttttttttatattagatggtctgtttataaatt-ta---------------------------------------------------------------------------------------------
| |||| || ||||| ||||| || ||  | ||||||||||||||||||||| | |||||||  |||||||||| ||| || |||||||| ||||||||||| | | | ||      |  ||| || ||||| || |||   |  |    ||| |     || |||  ||  | ||    ||||    || ||| |  ||||| ||                                                                                             
CAGAACCCACTTTGGAGGTGGTAAATCATCCGGGTTTGGTTTGATCTATGATACTGTTGAGAGCGCTAAGAAGTTTGAACCCAAATACAGACTTATCAGGgtaaatgctttttccactcttgtttccattgttatatattgctactcacattgacccgtcttaaatcattactcttgctcatta--ctgtttgtctgaaaattataagctatgtgataagtttcggactttatatcgtattgcacttggtgttctctgcatctttatacttaaacatgctttgtctatgtggttggcag

upper sequence: GLYMA10G30200.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G28060.1 (Arabidopsis thaliana), 5'ss of exon 3
CCGAACTCATTTTGGTGGTGGCAAGTCCACTGGGTTTGGTTTGATCTATGATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcattaaatctttctgt--gtcaa-------ttgtcattataattttt---ttggctttgtttgaatgctttttttttta-tattagatggtctgtttataaattta--------------------------------------
| ||||||| ||||| ||||| || ||  |||| | |||||||||||||||| | || ||||| |||||||||| ||||||||| ||||| ||||||||||| | |||  |  |  | | ||   || ||       || |  || || |||||    | ||||  | |   ||||||  |||| | |  |    | |      ||    ||                                       
CAGAACTCACTTTGGAGGTGGTAAATCTTCTGGATATGGTTTGATCTATGATACTGTCGAGAACGCTAAGAAGTTTGAGCCTAAGTACAGACTTATCAGGgtaatttctctttacttgtttgatagttaagtaaaacttttggttctagtttttagtctagcttactcttggtgctttgattttcactgctttgcgatgaaacaatggtgttgcaatctcatactgaaatgattgttgatgtgattgacag

upper sequence: GLYMA10G30200.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0030g01620.t01 (Vitis vinifera), 5'ss of exon 3
CCGAACTCATTTTGGTGGTGGCAAGTCCACTGGGTTTGGTTTGATCTATGATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcattaaatctttctgtgtcaattgtcattataatttttttggctttgtt-----tgaatgcttttt-tttttatatt-agatggtctgtttataaattta
||| ||||| ||||| ||||| ||||| ||||| ||||||||||| |||||||||||||||||||| |||||||| |||||||| |||||||| |||||||| | ||   ||||||| | | | ||| |||   | || |    |   ||| |  |     |||  | | |   ||||| |||| ||||| ||| | | |       
CCGGACTCACTTTGGAGGTGGGAAGTCTACTGGATTTGGTTTGATTTATGATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattatataaatctctttttctcatttgatttcatcaagcatcaagctattctgtatatgagggttgtgcgtttttgtatttagatgatctttattt-------

upper sequence: GLYMA10G30200.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S13_236V6.1 (Physcomitrella patens), 5'ss of exon 3
CCGAACTCATTTTGGTGGTGGCAAGTCCACTGGGTTTGGTTTGATCTATGATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgag-ttcattaaatctttctgtgtcaattgtcattataatttttttggctttgtttgaatgcttttttttttatattagatggtctgtttataaattta--------------------------------------------------------
| |||| ||||| || ||||||||||||||||| |||||| | ||||| || ||  ||||   ||||||||| || ||||| || |||||||| || |||||||| |||||  |  | |  |  ||  ||      | | |  || |||     ||         || ||||||   | | ||  | || | ||   |||                                                         
CAGAACGCATTTCGGAGGTGGCAAGTCCACTGGATTTGGTCTCATCTACGACTCCATTGACTCTGCTAAGAAATACGAGCCCAAGTACAGGCTCATTAGGgtgagattcatcgagacctgattggttcatc-cggctctgaggttcttgaaag-gtcaaggcatgttatttttttgttgaaataatttgctgattggtttggtgtgttcatttgtcaagatctttagtattgaggatagtttaatggttatttgcag

upper sequence: GLYMA10G30200.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S37_112V6.1 (Physcomitrella patens), 5'ss of exon 3
CCGAACTCATTTTGGTGGTGGCAAGTCCACTGGGTTTGGTTTGATCTATGATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttc-attaaatctttctgtgtca----attgtca----ttataattttt---ttggctttgtttgaatgcttttttttttatattagatggtctgtttataaattta-------------------------------------
| | || || ||||| |||||||||||||||||||| ||| | ||||| || || |||||   ||||||||| || ||||| || |||||||| || |||||  ||||  |     |     ||||||    |||        | ||||| | |   ||    |   ||      |||  || |   | | ||    ||  || |  ||  |                                     
CAGGACCCAATTTGGAGGTGGCAAGTCCACTGGGTTCGGTCTTATCTACGACTCTGTTGACTCTGCTAAGAAATACGAGCCCAAGTACAGGCTCATTAGGgtatgttctgtctcggcgcagggtgtcacgggatttctgcgagtgataatctatagcttatgctacctttctcaatttcattctggcaatcgaaaacctaattctgcatccactgtaattttaataactttcaaattgggaacatgtag

upper sequence: GLYMA10G30200.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S450_3V6.1 (Physcomitrella patens), 5'ss of exon 3
CCGAACTCATTTTGGTGGTGGCAAGTCCACTGGGTTTGGTTTGATCTATGATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcattaaatctttctgtgtcaattg--tcattata-atttttttggctttgtttgaatgcttttttttttatattagatggtctgtttataaattta--------------------------------------------------------------------------
  | || || ||||| ||||||||||||||||| |||||| | ||||| ||||| |||||    || ||||| || ||||| || || ||  | ||||||||||||    |   ||    |||    |  |  ||   | | | | ||  |  |  ||      || || ||  ||  |  ||  | | |  || | | | ||                                                                          
TAGGACCCAGTTTGGAGGTGGCAAGTCCACTGGCTTTGGTCTCATCTACGATTCCGTTGACTCCGCAAAGAAATACGAGCCCAAGTATAGATTGATCAGGgtgagt--gctgggtcgccatgtcctgaacggatcgggagacagtgttgcgtatgagtcacggggcgttgttggttcgagaagtggttgttgttttcagtgtagctactcgaatcgttcgttgtgttaggttgtcttggcaattggtatcgacgtttaaagtgagtggaatgtgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19347217|gb|BM892097.1|BM892097
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|192319535|gb|FK009517.1|FK009517
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|58025196|gb|CX711937.1|CX711937
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|209713547|gb|BW681537.1|BW681537
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|24135844|gb|BU926354.1|BU926354
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|254323029|gb|GR839942.1|GR839942
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|21675969|gb|BQ628320.1|BQ628320
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|192306132|gb|FG993694.1|FG993694
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|42722991|gb|CK768890.1|CK768890
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|192319861|gb|FK013273.1|FK013273
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|192300336|gb|FG991438.1|FG991438
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|11690358|gb|BF598034.1|BF598034
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|7796121|gb|AW781518.1|AW781518
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|15001054|gb|BI321868.1|BI321868
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|298185347|gb|HO030560.1|HO030560
EST:     ATTCAGTTGCGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|58020774|gb|CX707516.1|CX707516
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|192327529|gb|FK018205.1|FK018205
EST:     ATTCAGTTGAGAATGCTAAGAGGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|192311719|gb|FK003580.1|FK003580
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|38193084|gb|CF922290.1|CF922290
EST:     ATTCAGTTGAGAATGTTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|12773510|gb|BG238437.1|BG238437
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGA
EST: gi|192295452|gb|FG987066.1|FG987066
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|21595184|gb|BQ610395.1|BQ610395
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|298163232|gb|HO011965.1|HO011965
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAAGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|254315836|gb|GR825645.1|GR825645
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|151396920|gb|EV266793.1|EV266793
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|7145698|gb|AW507620.1|AW507620
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|10843108|gb|BF066427.1|BF066427
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|192325499|gb|FK017225.1|FK017225
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|209713548|gb|BW681538.1|BW681538
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|298168344|gb|HO014519.1|HO014519
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|298197015|gb|HO041782.1|HO041782
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|298194597|gb|HO043069.1|HO043069
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGACTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAACGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|192298217|gb|FG992052.1|FG992052
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAGGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|298187696|gb|HO031653.1|HO031653
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGGGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|13181016|gb|BG352356.1|BG352356
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|298183529|gb|HO028742.1|HO028742
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|298177182|gb|HO027077.1|HO027077
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|192311720|gb|FK003581.1|FK003581
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|298198844|gb|HO042207.1|HO042207
EST:     ATTCAGTTGTGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|192313094|gb|FK004684.1|FK004684
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|298173365|gb|HO016701.1|HO016701
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|192319534|gb|FK009516.1|FK009516
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|298171004|gb|HO016036.1|HO016036
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|6718631|gb|AW306278.1|AW306278
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|192306133|gb|FG993695.1|FG993695
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|298179237|gb|HO027708.1|HO027708
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAG
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAG
EST: gi|151393246|gb|EV263121.1|EV263121
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|254315835|gb|GR825644.1|GR825644
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|8285385|gb|BE022944.1|BE022944
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|254323030|gb|GR839943.1|GR839943
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|192305683|gb|FG998033.1|FG998033
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|298168639|gb|HO009569.1|HO009569
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|298181619|gb|HO025794.1|HO025794
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|192322531|gb|FK014652.1|FK014652
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|298165850|gb|HO008821.1|HO008821
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|192313093|gb|FK004683.1|FK004683
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|26058682|gb|CA801596.1|CA801596
EST:     ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGG                         AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcat ... tttattgcagAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCGAACTCATTTTGGTGGTGGCAAGTCCACTGGGTTTGGTTTGATCTATGATTCAGTTGAGAATGCTAAGAAGTATGAGCCTAAATACAGGCTTATCAGGgtgagttcattaaatctttctgtgtcaattgtcattataatttttttggctttgtttgaatgcttttttttttatattagatggtctgtttataaattta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT