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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAATACCACAAGATATCAGTAGGGATGAGTGGCTTCAAGCTCTGCCTCGTGCTCTAGTTGTTGGTTTTGTAAAAACTGACATAGAGTTTCAGAAAAAAGgtacattcagagttttcttggcatccctattggagttctccacatgcacttttcttgaccttataattttgcctgcag

Basic information

species Glycine max
transcript GLYMA10G29060.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G29060.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G09160.2 (Arabidopsis thaliana), 5'ss of exon 3
GCAATACCACAAGATATCAGTAGGGATGAGTGGCTTCAAGCTCTGCCTCGTGCTCTAGTTGTTGGTTTTGTAAAAACTGACATAGAGTTTCAGAAAAAAGgtac--attcagagttttctt-----ggcatcc------ctattggagttctccacatgcacttttcttgaccttata-attttgcctgcag
||||| || ||||     || ||||||||||||||||||||||| ||| | ||| |||||| ||| ||||| ||||||||||| || |||||| | ||||||      | |   || | ||     ||| |        |||||   ||| | ||      || |    ||    ||   || ||| | |||
GCAATTCCTCAAGGCGCAAGCAGGGATGAGTGGCTTCAAGCTCTTCCTAGGGCTTTAGTTGCTGGCTTTGTGAAAACTGACATTGAATTTCAGCAGAAAGgtcttagcttatgcttattttttaaaggctttttgctttctattcttgtttttcaagcatgctctaaccgataagatctgttgtgcttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6134100|gb|AW132493.1|AW132493
EST:     TGCTCTAGTTGTTGGTTTTGTAAAAACTGACATAGAGTTTCAGAAAAAAG                         GGGAAACTTCAGGAACAACAGCTACATTTGTTCTGGTTGATGGATGGACTG
genomic: TGCTCTAGTTGTTGGTTTTGTAAAAACTGACATAGAGTTTCAGAAAAAAGgtacattcag ... ttgcctgcagGGGAAACTTCAGGAACAACAGCTACATTTGTTCTGGTTGATGGATGGACTG
EST: gi|7589002|gb|AW704785.1|AW704785
EST:     TGCTCTAGTTGTTGGTTTTGTAAAAACTGACATAGAGTTTCAGAANAAAG                         GTGAAACTTCAGGAACAACAGCTACATTTGTTCTGGTTGATGGATGGACTG
genomic: TGCTCTAGTTGTTGGTTTTGTAAAAACTGACATAGAGTTTCAGAAAAAAGgtacattcag ... ttgcctgcagGGGAAACTTCAGGAACAACAGCTACATTTGTTCTGGTTGATGGATGGACTG
EST: gi|213620428|gb|DB957325.1|DB957325
EST:     TGCTCTAGTTGTTGGTTTTGTAAAAACTGACATAGAGTTTCAGAAAAAAG                         GGGAAACTTCAGGAACAACAGCTACATTTGTTCTGGTTGATGGATGGACTG
genomic: TGCTCTAGTTGTTGGTTTTGTAAAAACTGACATAGAGTTTCAGAAAAAAGgtacattcag ... ttgcctgcagGGGAAACTTCAGGAACAACAGCTACATTTGTTCTGGTTGATGGATGGACTG
EST: gi|298184440|gb|HO029653.1|HO029653
EST:     TGCTCTAGTTGTTGGTTTTGTAAAAACTGACATAGAGTTTCAGAAAAAAG                         GGGAAACTTCAGGAACAACAGCTACATTTGTTCTGGTTGATGGATGGACTG
genomic: TGCTCTAGTTGTTGGTTTTGTAAAAACTGACATAGAGTTTCAGAAAAAAGgtacattcag ... ttgcctgcagGGGAAACTTCAGGAACAACAGCTACATTTGTTCTGGTTGATGGATGGACTG