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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAATGTGAGTGGGCGAATTTTAGTTGGATTGAGGTGGTGGAATGAAATTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAGgtaggtattcagtattttccttgtttagatccgttgcagtggtgtaatctctctatcgtgtactgtatctgctgaatcagaacatagcttaagaactggctctgaattctttattgatacgtgcttgcatcttattcttatattgattttttgcccctccag

Basic information

species Glycine max
transcript GLYMA10G28620.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G28620.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0060g00830.t01 (Vitis vinifera), 5'ss of exon 3
GAAGAATGTGAGTGGGCGAATTTTAGTTGGATTGAGGTGGTGGAATGAAATTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAGgtaggtattcagtattttccttgtttagatccgttgcagtggtgtaatctctctatcgtgtactgtatctgctgaatcagaacatagcttaagaactggctctgaattctttattgatacgtgcttgcatcttattcttatattgat--tttttgcccctccag
 ||||||||||||||||| || |||||||| |||||||||||||| ||||| |||||||| || |||||||| |||| ||||||||| |||||||| ||||| ||||||  | ||||        |||  |  |||   ||    | | ||| |  | |  |      |   ||||| | |        | |   || | |||| | || ||||  ||   |  |  ||| |   |  ||| || ||  || ||||   | |||
CAAGAATGTGAGTGGGCGCATCTTAGTTGGTTTGAGGTGGTGGAACGAAATAAATGATCTAGGAGAGAGTGTGTGGAGATTTGAATGCCTTGACCAAGAGgttggtatt-ggcatttca------taggacttttgttatg----agtttcttttcccttgatca---ccattgaatgaaat-----gctgatggcttgttctggagtccttatgcatgaattttatcat-tgggtaatatctttatcattgttgctgatacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192314171|gb|FK011543.1|FK011543
EST:     TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAG                         TCATTGGCTCGGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTG
genomic: TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAGgtaggtattc ... gcccctccagTCATTGGCTCGGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTG
EST: gi|18719390|gb|BM523167.1|BM523167
EST:     TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAG                         TCATTGGCTCGGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTG
genomic: TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAGgtaggtattc ... gcccctccagTCATTGGCTCGGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTG
EST: gi|193529860|gb|FK485709.1|FK485709
EST:     TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAG                         TCATTGGCTCGGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTG
genomic: TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAGgtaggtattc ... gcccctccagTCATTGGCTCGGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTG
EST: gi|298168658|gb|HO009588.1|HO009588
EST:     TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAG                         TCATTGGCTCGGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCT
genomic: TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAGgtaggtattc ... gcccctccagTCATTGGCTCGGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCT
EST: gi|192322592|gb|FK014713.1|FK014713
EST:     TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAG                         TCATTGGCTCGGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTG
genomic: TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAGgtaggtattc ... gcccctccagTCATTGGCTCGGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTG
EST: gi|19348499|gb|BM893031.1|BM893031
EST:     TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAG                         TCATTGGCTCGGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTG
genomic: TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAGgtaggtattc ... gcccctccagTCATTGGCTCGGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTG
EST: gi|192333423|gb|FK023952.1|FK023952
EST:     TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAG                         TCATTGGCTCGGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTG
genomic: TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAGgtaggtattc ... gcccctccagTCATTGGCTCGGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTG
EST: gi|58025339|gb|CX712080.1|CX712080
EST:     TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAG                         TCATTGGCTCGGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTG
genomic: TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAGgtaggtattc ... gcccctccagTCATTGGCTCGGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTG
EST: gi|192314172|gb|FK011544.1|FK011544
EST:     TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAG                         TCATTGGCTCGGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTG
genomic: TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAGgtaggtattc ... gcccctccagTCATTGGCTCGGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTG
EST: gi|298163961|gb|HO013606.1|HO013606
EST:     TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAG                         TCATTGGCTCGGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTG
genomic: TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAGgtaggtattc ... gcccctccagTCATTGGCTCGGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTG
EST: gi|298170569|gb|HO019193.1|HO019193
EST:     TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAG                         TCATTGGCTCGGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTG
genomic: TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAGgtaggtattc ... gcccctccagTCATTGGCTCGGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTG
EST: gi|192326657|gb|FK017314.1|FK017314
EST:     TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAG                         TCATTGGCTCGGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTG
genomic: TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAGgtaggtattc ... gcccctccagTCATTGGCTCGGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTG