Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATGGAAGCCACAGTTGTTGATGGCAATGGAACGGAGACAGGACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttcccccccttttttcctttatcaatcatatacacactcatttatgccgtttgaaatgattaactcttgcactgtctcactttctgtgcttac...

Basic information

species Glycine max
transcript GLYMA10G28530.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G28530.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 3
GAAATGGAAGCCACAGTTGTTGATGGCAATGGAACGGAGACAGGACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttccc---ccccttttttcctttatcaatcatata-cacactcatttatgccgtttgaaa-tgattaact--cttgcactgtctcactttctgtgcttac
|| |||||||| ||||||||||| || |||||||| |||||||| ||||| |||||||| || ||||| ||||||||||| || || |||||||||||  | |     | | ||  ||   || |  |||  ||| ||         ||||| |||     |  |||  |   |  || | |||    ||||        
GAGATGGAAGCAACAGTTGTTGACGGTAATGGAACAGAGACAGGTCATATAATTGTGACGACTATTGGTGGTAGAAATGGCCAACCAAAGCAGgtatatatgcttgagcacattccttaggttttggatctcatagcatgtcaggagatgccatttttgcctttttaggtgattaacattttcttgggttcta-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23726962|gb|BU761494.1|BU761494
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... aatattttagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|254344095|gb|GR851005.1|GR851005
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... aatattttagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|21602288|gb|BQ612619.1|BQ612619
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... aatattttagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|298194802|gb|HO043274.1|HO043274
EST:     GGCATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... aatattttagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|5676842|gb|AI937972.1|AI937972
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... aatattttagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT