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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCATGAGGAATCGGTTGAAGAGTTTGTTCGTCGGAACCTTGGTGATGAGGTTTTTGAACGGTTGATAGAGCCTTTTTGTTCAGgttggagcattgacttgtttgctctcttttttgttattcttgttaacctctaaccaaccttctattattatgtgttactttttgacccagggatattcag...

Basic information

species Glycine max
transcript GLYMA10G27890.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G27890.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G01690.1 (Arabidopsis thaliana), 5'ss of exon 3
GGTCATGAGGAATCGGTTGAAGAGTTTGTTCGTCGGAACCTTGGTGATGAGGTTTTTGAACGGTTGATAGAGCCTTTTTGTTCAGgttggagcattgacttgtttgctctcttttttgttattcttgttaacctctaaccaaccttctattattat-gtgttactttttgacccaggg-atattcag-----------------------
|||| ||| ||||| || || |||||||| || || ||||| ||||||||||||||||| ||  |||| || || |||||||||||| |    || ||      | |           |||||| | |||      | | || ||  |  | |    || ||  ||||||  | || | |   | |                        
GGTCGTGAAGAATCTGTGGAGGAGTTTGTACGGCGTAACCTCGGTGATGAGGTTTTTGAGCGCCTGATTGAACCGTTTTGTTCAGgtagagttatagataaaacttcatgtgaaccatttattcat-ttagatgtcagcgaatctgattatctagcagttttcatttttgttctagtgcacccttaatgctttagattttatgcttttag

upper sequence: GLYMA10G27890.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0005g02540.t01 (Vitis vinifera), 5'ss of exon 3
GGTCATGAGGAATCGGTTGAAGAGTTTGTTCGTCGGAACCTTGGTGATGAGGTTTTTGAACGGTTGATAGAGCCTTTTTGTTCAGgt-tggagcattgacttgtttgctctcttttttgttattcttgttaacctctaaccaaccttctattattatgtgt---tactttttgacccagggatattcag
| |||||||||||| |||||||||||||| ||||| || |||||||||||||||||||||||  |||||||||| ||||||||||||    | || |   |  | | ||     | |      || || |    ||||       || ||   ||||   |   ||| |  | |   |   |||||   
GATCATGAGGAATCTGTTGAAGAGTTTGTGCGTCGTAATCTTGGTGATGAGGTTTTTGAACGCCTGATAGAGCCATTTTGTTCAGgtgctaatcagtttttgatgttcttagcctatcacgtatcatgctgcattctactgggaattataaagttatacttaaatacctgctaatttatc-atatt---

upper sequence: GLYMA10G27890.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ23527 (Selaginella moellendorffii), 5'ss of exon 3
GGTCATGAGGAATCGGTTGAAGAGTTTGTTCGTCGGAACCTTGGTGATGAGGTTTTTGAACGGTTGATAGAGCCTTTTTGTTCAGgttggagcattgacttgtttgctctcttttttgttattcttgttaacctctaaccaaccttctattattatgtgttactttttgacccagggatattcag
|||  ||| ||||| || ||  ||||||||||||||||||| |||||||| || |||||  || |||| || ||||| |||||||||  ||| | | | ||| |||   |   ||||    ||   |||    |  |                                                
GGTGGTGAAGAATCCGTAGAGCAGTTTGTTCGTCGGAACCTAGGTGATGAAGTCTTTGAGAGGCTGATCGAACCTTTCTGTTCAGgt--gagtact-atttgattggcgtagattttcccctta--gttggatttcag-----------------------------------------------

upper sequence: GLYMA10G27890.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ34803 (Selaginella moellendorffii), 5'ss of exon 2
---------------GGTCATGAGGAATCGGTTGAAGAGTTTGTTCGTCGGAACCTTGGTGATGAGGTTTTTGAACGGTTGATAGAGCCTTTTTGTTCAGgttggagcattgacttgtttgctctcttttttgttattcttgttaacctctaaccaaccttctattattatgtgttactttttgacccagggatattcag
               |||  ||| ||||| || ||  ||||||||||||||||||| |||||||| || |||||  || |||| || ||||| |||||||||  ||| | | | ||| |||   |   ||||  | ||   |||    |  |                                                
TTTCTGTTCGTGCAGGGTGGTGAAGAATCCGTAGAGCAGTTTGTTCGTCGGAACCTAGGTGATGAAGTCTTTGAGAGGCTGATCGAACCTTTCTGTTCAGgt--gagtact-atttgattgacgtagattttcctctta--gttggatttcag-----------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15338141|gb|BI498797.1|BI498797
EST:     GAACCTTGGTGATGAGGTTTTTGAACGGTTGATAGAGCCTTTTTGTTCAG                         GGGTCTATGCAGGCGATCCTTCAAAATTAAGTATGAAAGCAGCATTCGGGA
genomic: GAACCTTGGTGATGAGGTTTTTGAACGGTTGATAGAGCCTTTTTGTTCAGgttggagcat ... tgttatatagGGGTCTATGCAGGCGATCCTTCAAAATTAAGTATGAAAGCAGCATTCGGGA
EST: gi|15338083|gb|BI498739.1|BI498739
EST:     GAACCTTGGTGATGAGGTTTTTGAACGGTTGATAGAGCCTTTTTGTTCAG                         GGGTCTATGCAGGCGATCCTTCAAAATTAAGTATGAAAGCAGCATTCGGGA
genomic: GAACCTTGGTGATGAGGTTTTTGAACGGTTGATAGAGCCTTTTTGTTCAGgttggagcat ... tgttatatagGGGTCTATGCAGGCGATCCTTCAAAATTAAGTATGAAAGCAGCATTCGGGA
EST: gi|17022014|gb|BM093048.1|BM093048
EST:     GAACCTTGGTGATGAGGTTTTTGAACGGTTGATAGAGCCTTTTTGTTCAG                         GGGTCTATGCAGGCGATCCTTCAAAATTAAGTATGAAAGCAGCATTCGGGA
genomic: GAACCTTGGTGATGAGGTTTTTGAACGGTTGATAGAGCCTTTTTGTTCAGgttggagcat ... tgttatatagGGGTCTATGCAGGCGATCCTTCAAAATTAAGTATGAAAGCAGCATTCGGGA