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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGGATGCTGAGGACATATGTGGTGTGGTTGCTAGTGTGCGCCAGTGGCAGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttattatcttgtaaatgatactatgcaattgaaatttatgttatgttgtctattttcttgtctgtatatgatttcctagtgtagaatctatagaa...

Basic information

species Glycine max
transcript GLYMA10G27570.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254343454|gb|GR857158.1|GR857158
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: gi|21257025|gb|BQ453913.1|BQ453913
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACTAGATA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: gi|192302214|gb|FG995838.1|FG995838
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: gi|298169150|gb|HO020510.1|HO020510
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGAT
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGAT
EST: gi|6746805|gb|AW317261.1|AW317261
EST:     GTGGACATAGACAGCAGCAAATGAAGCTGCCCAG                         ATTATCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
genomic: GTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: gi|193600186|gb|FK553423.1|FK553423
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACG
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACG
EST: gi|192302215|gb|FG995839.1|FG995839
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: gi|298173651|gb|HO016987.1|HO016987
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: gi|298179882|gb|HO025097.1|HO025097
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTGACGACAAGATA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: gi|298176128|gb|HO015533.1|HO015533
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGAT
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGAT
EST: gi|209710301|gb|BW676363.1|BW676363
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: gi|208207730|gb|GE008057.1|GE008057
EST:     AAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG                         ATGAGCATTGGAGGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
genomic: AAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: gi|24136483|gb|BU926993.1|BU926993
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: gi|192304887|gb|FG997069.1|FG997069
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: gi|193409657|gb|FK375005.1|FK375005
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: gi|298167914|gb|HO013177.1|HO013177
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGA
EST: gi|207795939|gb|GD767356.1|GD767356
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG                         ATGAGCATTAGGAAAGGAAAGTGGAAGGAAATCA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATT-GGAA-GGAA-GTGGAAGGAAATCA
EST: gi|298164873|gb|HO010870.1|HO010870
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGA
EST: gi|31464266|gb|CD406294.1|CD406294
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: gi|209716295|gb|BW657598.1|BW657598
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: gi|298174019|gb|HO017355.1|HO017355
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGG
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGG
EST: gi|151400105|gb|EV269919.1|EV269919
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: gi|208130598|gb|GD930191.1|GD930191
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCA
EST: gi|298177859|gb|HO027412.1|HO027412
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG                         ATGAGCATTGGAAGGAAGTG
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTG
EST: gi|298175984|gb|HO015389.1|HO015389
EST:     AGGACAAACCTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: gi|254339730|gb|GR857855.1|GR857855
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: gi|192323520|gb|FK017101.1|FK017101
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: gi|192329523|gb|FK022215.1|FK022215
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: gi|298195261|gb|HO043789.1|HO043789
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGA
EST: gi|151395269|gb|EV265140.1|EV265140
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: gi|10238974|gb|BE807862.1|BE807862
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: gi|192295702|gb|FG990556.1|FG990556
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: gi|298195765|gb|HO044156.1|HO044156
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGG
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGG
EST: gi|254339729|gb|GR857854.1|GR857854
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: gi|209710300|gb|BW676362.1|BW676362
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: gi|192304888|gb|FG997070.1|FG997070
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: gi|151409238|gb|EV279046.1|EV279046
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG                         ATGAGCATTGG--G-AAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
EST: gi|192329522|gb|FK022214.1|FK022214
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttatt ... atttttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTTAACGACAAGATA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAGGATGCTGAGGACATATGTGGTGTGGTTGCTAGTGTGCGCCAGTGGCAGGACAAACTTTCGTTGTGGACAAAGACAGCAGCAAATGAAGCTGCCCAGgttttttattatcttgtaaatgatactatgcaattgaaatttatgttatgttgtctattttcttgtctgtatatgatttcctagtgtagaatctatagaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC