Sequence
atgc intronic sequence ATGC exonic sequenceGGAAGAGCTTGGTGTGCCGTTGTCTCAGCTTGCAATTGCGTGGTGTGCTGCTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAGgttagttctttttgttgttgggtttatttaccgtaaaggagagtgattatttatctgttgatgaaatgttgattgcattgtggtgagaaactaacctgtt...
Basic information
species | Glycine max |
transcript | GLYMA10G24620.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G24620.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G04690.1 (Arabidopsis thaliana), 5'ss of exon 4
GGAAGAGCTTGGTGTGCCGTTGTCTCAGCTTGCAATTGCGTGGTGTGCTGCTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAGgttagttctttttgttgttgggtttatttaccgtaaaggagagtgattatttatctgttgatgaaatgttgattgcattgtggtgagaaactaacctgtt-----
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AGATGAGCTAGGTGTAACCTTGGCTCAGCTTGCAATCGCATGGTGTGCTTCAAATCCTAATGTGTCATCTGTTATCACTGGTGCCACAAGGGAGTCACAGgttagttcttgatcgcttataaagcattaac----atagcgagtctcggtctagatttggatccaagatctgaaagattttgtttctttttttgtaccttgacag
upper sequence: GLYMA10G24620.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv05s0051g00650.t01 (Vitis vinifera), 5'ss of exon 3
GGAAGAGCTTGGTGTGCCGTTGTCTCAGCTTGCAATTGCGTGGTGTGCTGCTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAGgttagttctttttgt----tgttgggtttatttaccgtaaaggagagtgattatttatctgttgatgaaatgttgattgcattgtggtgagaaactaacctgtt
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AGACGAACTAGGTGTACCTTTGTCTCAACTTGCAATTGCTTGGTGTGCTGCAAATCCGAATGTCTCATCAGTTATTACTGGGGCGACAAAGGAGTCTCAGgtcagttttatacatgcattctcaaaaatagatatgccacaaatctgtgatc--ctatgcatttgttttgtgttcatttatttctatccatccaccatttaa--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207828669|gb|GD800514.1|GD800514EST: CTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAG ATTCAAGAGAACATGAAAAGCAATCGATGTCATTCCGTTATTGACTCCTGT
genomic: CTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAGgttagttctt ... tgttgctcagATTCAAGAGAACATGAAA-GCAATCGATGTCATTCCATTATTGACTCCTGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAAGAGCTTGGTGTGCCGTTGTCTCAGCTTGCAATTGCGTGGTGTGCTGCTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAGgttagttctttttgttgttgggtttatttaccgtaaaggagagtgattatttatctgttgatgaaatgttgattgcattgtggtgagaaactaacctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG