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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCTGGAAAAGCCCTCATTTCTTCAACGCGATTAAAGAGCGTGAGTTAGATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAGgtgcacaatttaatcttcttcccttccttttagtttccccttatatttgaaaggatatatcgttatgactctgtcttcatatgtgcttcatttataaaaaaattcatccttgtgttcttaaatttgcaatggattttcctgcag

Basic information

species Glycine max
transcript GLYMA10G24350.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G24350.2 (Glycine max), 5'ss of exon 3
lower sequence: AT1G09760.1 (Arabidopsis thaliana), 5'ss of exon 2
GATCTGGAAAAGCCCTCATTTCTTCAACGCGATTAAAGAGCGTGAGTTAGATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAGgtgcacaatttaatcttcttcccttccttttagtttccccttatatttgaaaggatatatcgttatgactctgtcttcatatgtgcttca-tttataaaaaaattcatccttgtgttcttaaatttgcaatggattttcctgcag
                                                           | ||||||||  ||||||| || ||||||||||||||||||||      |||  |||       ||| |||    ||   ||  ||  |||| | || | | | |  |  | | |     ||||| ||| | | |          |                                        
-----------------------------------------------------------GTAACAAGATTCCTGTAATCGAAAACTTGGGTGCTACTGAGgtatttc-ttttttctatcgattttcgtttcctctttgtctgttagctgaa-gaatttgttgatgcggttgtatt---gtatgttcttaagtctgcctgttgggt----------------------------------------

upper sequence: GLYMA10G24350.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv01s0150g00590.t01 (Vitis vinifera), 5'ss of exon 2
GATCTGGAAAAGCCCTCATTTCTTCAACGCGATTAAAGAGCGTGAGTTAGATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAGgtgcacaatttaatcttcttcccttccttttagtttcccc-ttatatttgaaaggatatatcgttatgact--ctgtcttcatatgtgcttcatttataaaaaaattcatccttgtgttcttaaatttgcaatggattttcctgcag
                                                           | || ||| | |||||||||||||||||||| ||||| ||||||     |    | | | |  ||   |||||| | |  | ||||||                | || ||    |||  | ||  ||  ||||  ||||                                                
-----------------------------------------------------------GGAATAAGGTTGCTGTAATTGAGAACTTGGGCGCTACAGAGgtgtgtt-tgctttttccctttctaaattttagctacttcattatatcaaggttttgcccctctcatcaccaattgtggtaatgggtttttcacatatatt----------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58016033|gb|CX702775.1|CX702775
EST:     GAGAACTTGGGTGTTACTGA-                         GACCAATTCGACACAATAGACTTATCTGACAATGAGA-TGNTCAAAC-TGA
genomic: GAGAACTTGGGTGCTACTGAGgtgcacaatt ... tttcctgcagGACCAATTCGACACAATAGACTTATCTGACAATGAGATTG-TCAAACTTG-
EST: gi|27425309|gb|CA936829.1|CA936829
EST:     ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAG                         GACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
genomic: ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAGgtgcacaatt ... tttcctgcagGACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
EST: gi|7926083|gb|AW832109.1|AW832109
EST:     ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAG                         GACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
genomic: ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAGgtgcacaatt ... tttcctgcagGACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
EST: gi|192320515|gb|FK011925.1|FK011925
EST:     ATCTTCGAGGCAACAAGATAGCTGTAATCGAGAACTTGGGTGCTACTGAG                         GACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
genomic: ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAGgtgcacaatt ... tttcctgcagGACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
EST: gi|7691074|gb|AW759208.1|AW759208
EST:     ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAG                         GACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
genomic: ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAGgtgcacaatt ... tttcctgcagGACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
EST: gi|13479182|gb|BG508525.1|BG508525
EST:     ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAG                         GACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
genomic: ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAGgtgcacaatt ... tttcctgcagGACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
EST: gi|213618238|gb|DB973008.1|DB973008
EST:     ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAG                         GACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
genomic: ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAGgtgcacaatt ... tttcctgcagGACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
EST: gi|16106162|gb|BI893902.1|BI893902
EST:     ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAG                         GACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
genomic: ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAGgtgcacaatt ... tttcctgcagGACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
EST: gi|13791609|gb|BG654200.1|BG654200
EST:     ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAG                         GACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
genomic: ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAGgtgcacaatt ... tttcctgcagGACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
EST: gi|192308052|gb|FG999035.1|FG999035
EST:     ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAG                         GACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
genomic: ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAGgtgcacaatt ... tttcctgcagGACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
EST: gi|213595893|gb|DB966252.1|DB966252
EST:     ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAG                         GACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
genomic: ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAGgtgcacaatt ... tttcctgcagGACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
EST: gi|10232355|gb|BE801243.1|BE801243
EST:     ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAG                         GACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
genomic: ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAGgtgcacaatt ... tttcctgcagGACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
EST: gi|27446299|gb|CA953422.1|CA953422
EST:     ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAG                         GACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA
genomic: ATCTTCGAGGCAACAAGATAGCTGTAATTGAGAACTTGGGTGCTACTGAGgtgcacaatt ... tttcctgcagGACCAATTCGACACAATAGACTTATCTGACAATGAGATTGTCAAACTTGAA