Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGCTACAATTATGGGTCCAACTGACAGTCCTTATGCTGGTGGTGTATTCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAGgtaactaactaggcctaaagcttcttgatggattcaagtacttgctatgcgtgttactttataagcaatttcttataggatattgaaatcaatatatata...

Basic information

species Glycine max
transcript GLYMA10G18310.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G18310.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G102471_T04 (Zea mays), 5'ss of exon 3
GCAAGCTACAATTATGGGTCCAACTGACAGTCCTTATGCTGGTGGTGTATTCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAGgtaactaactaggcctaaagcttcttgatggattcaagtacttgc-tatgcgtgttactttataagcaatttcttataggata----ttgaaatcaatata-tata------------------------------------------------
|||||| || || ||||| ||  | ||||| || | ||| ||||| |||||| |||||| ||||||||||||||| ||||| || || |||||||||||||||  |         |     ||||  |  |   |   ||| ||  |||     || ||  |    |||||    ||| | ||    ||||||    || | | |                                                 
GCAAGCGACCATCATGGGGCCTTCGGACAGCCCATTTGCAGGTGGGGTATTCTTGGTGAACATTCACTTCCCACCGGATTACCCTTTCAAGCCACCAAAGgtattttctctaatttttgatttct--aatgccacctctacctgtatatttagattcctagagttacaattgtgcatatggtaacttttgaaacagttacaatgttttaatgtgaagatgatatgcttatctgcaggtgtctttccgcaccaag

upper sequence: GLYMA10G18310.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G102471_T03 (Zea mays), 5'ss of exon 2
GCAAGCTACAATTATGGGTCCAACTGACAGTCCTTATGCTGGTGGTGTATTCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAGgtaactaactaggcctaaagcttcttgatggattcaagtacttgc-tatgcgtgttactttataagcaatttcttataggata----ttgaaatcaatata-tata------------------------------
|||||| || || ||||| ||  | ||||| || | ||| ||||| |||||| |||||| ||||||||||||||| ||||| || || |||||||||||||||  |         |     ||||  |  |   |   ||| ||  |||     || ||  |    |||||    ||| | ||    ||||||    || | | |                               
GCAAGCGACCATCATGGGGCCTTCGGACAGCCCATTTGCAGGTGGGGTATTCTTGGTGAACATTCACTTCCCACCGGATTACCCTTTCAAGCCACCAAAGgtattttctctaatttttgatttct--aatgccacctctacctgtatatttagattcctagagttacaattgtgcatatggtaacttttgaaacagttacaatgttttaatgtgaagatgatatgcttatctgcag

upper sequence: GLYMA10G18310.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G56150.2 (Arabidopsis thaliana), 5'ss of exon 3
GCAAGCTACAATTATGGGTCCAACTGACAGTCCTTATGCTGGTGGTGTATTCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAGgtaactaactaggcctaaagcttcttg-atggattcaagta-cttgctatgcgtgttactttataa-gcaatttcttatagga--tattgaaatcaatatatata----------------------------------
|||||| || || ||||||||| | || || || | ||| || ||||| || || || ||||||||||||||||||||||| || || |||||||||||||||||  |       |     || ||   |  |||   ||| |||  |     ||||  |  | |     ||   ||| ||    | || ||   | ||    |                                   
GCAAGCAACTATCATGGGTCCAGCAGATAGCCCGTTTGCCGGAGGTGTGTTTCTTGTTACCATTCACTTCCCACCAGATTACCCTTTCAAGCCACCAAAGgtaacagaagttttttgttttttgttatgtttatttgtgtagcttaatgaatttgttcatccacaccattatgatttagagagagtgttcaatcaagtaggctttttgtggcaataaaccttcattgtttatgatgcag

upper sequence: GLYMA10G18310.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv19s0015g01190.t01 (Vitis vinifera), 5'ss of exon 3
GCAAGCTACAATTATGGGTCCAACTGACAGTCCTTATGCTGGTGGTGTATTCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAGgtaact-------aactaggcctaaagcttcttgatggattcaagtacttgctatgcgtgttactttataagcaatttcttataggatattgaaatcaatatatata
|||||| || ||||||||||||| |||||| ||||  ||||| ||||| || |||||| |||| ||||||||||| ||||| ||||| |||||||| ||||||||        ||||  |  |       ||   ||      |||     || |  |  ||  | ||    ||| ||| | |   | | | ||||  |   |    
GCAAGCAACTATTATGGGTCCAAGTGACAGCCCTTTCGCTGGAGGTGTGTTTCTGGTGTCCATCCACTTCCCACCGGATTACCCATTCAAGCCACCCAAGgtaacagaaaaaaaactgtgttttgtttccctgagtgtgactcagtgtggtctctatgcattgatgtacc--caagttcat-tgctacactaaaatgcaagga----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9819671|gb|BE555184.1|BE555184
EST:     TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAG                         GTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
genomic: TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAGgtaactaact ... gcttttgtagGTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
EST: gi|15001120|gb|BI321934.1|BI321934
EST:     TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAG                         GTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
genomic: TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAGgtaactaact ... gcttttgtagGTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
EST: gi|151405165|gb|EV274979.1|EV274979
EST:     TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAG                         GTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
genomic: TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAGgtaactaact ... gcttttgtagGTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
EST: gi|19269376|gb|BM885632.1|BM885632
EST:     TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAG                         GTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
genomic: TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAGgtaactaact ... gcttttgtagGTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
EST: gi|192333375|gb|FK024352.1|FK024352
EST:     TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAG                         GTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
genomic: TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAGgtaactaact ... gcttttgtagGTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
EST: gi|5760252|gb|AI965615.1|AI965615
EST:     TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAG                         GTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
genomic: TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAGgtaactaact ... gcttttgtagGTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
EST: gi|16347704|gb|BI973299.1|BI973299
EST:     TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAG                         GTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
genomic: TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAGgtaactaact ... gcttttgtagGTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
EST: gi|8403230|gb|BE058864.1|BE058864
EST:     TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAG                         GTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
genomic: TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAGgtaactaact ... gcttttgtagGTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
EST: gi|37995518|gb|CF807107.1|CF807107
EST:     TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAG                         GTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
genomic: TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAGgtaactaact ... gcttttgtagGTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
EST: gi|16996965|gb|BM086337.1|BM086337
EST:     TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAG                         GTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
genomic: TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAGgtaactaact ... gcttttgtagGTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
EST: gi|33387783|gb|CA850990.1|CA850990
EST:     TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAG                         GTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
genomic: TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAGgtaactaact ... gcttttgtagGTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
EST: gi|298198640|gb|HO040179.1|HO040179
EST:     TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAG                         GTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
genomic: TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAGgtaactaact ... gcttttgtagGTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
EST: gi|10234967|gb|BE803855.1|BE803855
EST:     TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAG                         GTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
genomic: TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAGgtaactaact ... gcttttgtagGTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
EST: gi|120493582|gb|EH221749.1|EH221749
EST:     TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAG                         GTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
genomic: TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAGgtaactaact ... gcttttgtagGTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
EST: gi|7590752|gb|AW706424.1|AW706424
EST:     TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAG                         GTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
genomic: TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAGgtaactaact ... gcttttgtagGTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
EST: gi|308098911|gb|HO760752.1|HO760752
EST:     TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAG                         GTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
genomic: TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAGgtaactaact ... gcttttgtagGTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
EST: gi|24136559|gb|BU927069.1|BU927069
EST:     TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAG                         GTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
genomic: TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAGgtaactaact ... gcttttgtagGTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
EST: gi|209697761|gb|BW663913.1|BW663913
EST:     TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAG                         GTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
genomic: TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAGgtaactaact ... gcttttgtagGTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
EST: gi|192313043|gb|FK004661.1|FK004661
EST:     TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAG                         GTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
genomic: TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAGgtaactaact ... gcttttgtagGTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
EST: gi|192333374|gb|FK024351.1|FK024351
EST:     TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAG                         GTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
genomic: TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAGgtaactaact ... gcttttgtagGTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
EST: gi|14126317|gb|BG790755.1|BG790755
EST:     AGATTATCCATTTAAGCCACCAAAG                         GTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
genomic: AGATTATCCATTTAAGCCACCAAAGgtaactaact ... gcttttgtagGTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
EST: gi|209697762|gb|BW663914.1|BW663914
EST:     TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAG                         GTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
genomic: TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAGgtaactaact ... gcttttgtagGTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
EST: gi|19453541|gb|BM954951.1|BM954951
EST:     TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAG                         GTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
genomic: TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAGgtaactaact ... gcttttgtagGTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
EST: gi|192313044|gb|FK004662.1|FK004662
EST:     TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAG                         GTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
genomic: TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAGgtaactaact ... gcttttgtagGTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
EST: gi|31307888|gb|CD393091.1|CD393091
EST:     TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAG                         GTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
genomic: TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAGgtaactaact ... gcttttgtagGTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
EST: gi|192322601|gb|FK014722.1|FK014722
EST:     TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAG                         GTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
genomic: TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAGgtaactaact ... gcttttgtagGTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
EST: gi|33387822|gb|CA851029.1|CA851029
EST:     TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAG                         GTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
genomic: TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAGgtaactaact ... gcttttgtagGTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
EST: gi|22525311|gb|BU084122.1|BU084122
EST:     TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAG                         GTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT
genomic: TCCTGGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAGgtaactaact ... gcttttgtagGTTTCCTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGT