1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAGTGCATTGTGGGGGAAGCTGGCAGCTGAAATTTTGATGCAGAACTGGGACATCGCTCTTGAAGAGCTCAACCGCTTGAAGGAAATCATTGACTCAAAGgttgttcttgtttgtcagttggtctttggagtagatgcatgttcttgtttgttgtgcttaaaatatttaatatagactggtggtgaactttgttgcag
species | Glycine max |
transcript | GLYMA10G16090.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACATCGCTCTTGAAGAGCTCAACCGCTTGAAGGAAATCATTGACTCAAAG AATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCATEST: gi|193447481|gb|FK415006.1|FK415006
genomic: ACATCGCTCTTGAAGAGCTCAACCGCTTGAAGGAAATCATTGACTCAAAGgttgttcttg ... tttgttgcagAATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCAT
EST: ACATTGCTCTTGAAGAGCTCAATCGCTTGAAGGAAATCATTGATTCAAAG AATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCATEST: gi|19053227|gb|BM731894.1|BM731894
genomic: ACATCGCTCTTGAAGAGCTCAACCGCTTGAAGGAAATCATTGACTCAAAGgttgttcttg ... tttgttgcagAATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCAT
EST: ACATCGCTCTTGAAGAGCTCAACCGCTTGAAGGAAATCATTGACTCAAAG AATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCATEST: gi|13789066|gb|BG651657.1|BG651657
genomic: ACATCGCTCTTGAAGAGCTCAACCGCTTGAAGGAAATCATTGACTCAAAGgttgttcttg ... tttgttgcagAATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCAT
EST: ACATCGCTCTTGAAGAGCTCAACCGCTTGAAGGAAATCATTGACTCAAAG AATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCATEST: gi|254316955|gb|GR828492.1|GR828492
genomic: ACATCGCTCTTGAAGAGCTCAACCGCTTGAAGGAAATCATTGACTCAAAGgttgttcttg ... tttgttgcagAATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCAT
EST: ACATCGCTCTTGAAGAGCTCAACCGCTTGAAGGAAATCATTGACTCAAAG AATTTTGCATCACCTTTGAACCAG-TGCAAAGCAGAA-ATGGCTGATGCATEST: gi|193323769|gb|FK291293.1|FK291293
genomic: ACATCGCTCTTGAAGAGCTCAACCGCTTGAAGGAAATCATTGACTCAAAGgttgttcttg ... tttgttgcagAATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCAT
EST: ACATCGCTCTTGAAGAGCTCAACCGCTTGAAGGAAATCATTGACTCAAAG AATTTTGCAATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCAEST: gi|193588990|gb|FK541816.1|FK541816
genomic: ACATCGCTCTTGAAGAGCTCAACCGCTTGAAGGAAATCATTGACTCAAAGgttgttcttg ... tttgttgcagAATTTTGCA-TCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCA
EST: ACATCGCTCTTGAAGAGCTCAACCGCTTGAAGGAAATCATTGACTCAAAG AATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCATEST: gi|209707121|gb|BW661575.1|BW661575
genomic: ACATCGCTCTTGAAGAGCTCAACCGCTTGAAGGAAATCATTGACTCAAAGgttgttcttg ... tttgttgcagAATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCAT
EST: ACATCGCTCTTGAAGAGCTCAACCGCTTGAAGGAAATCATTGACTCAAAG AATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCATEST: gi|21479769|gb|BQ576452.1|BQ576452
genomic: ACATCGCTCTTGAAGAGCTCAACCGCTTGAAGGAAATCATTGACTCAAAGgttgttcttg ... tttgttgcagAATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCAT
EST: ACATCGCTCTTGAAGAGCTCAACCGCTTGAAGGAAATCATTGACTCAAAG AATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCATEST: gi|7588257|gb|AW704056.1|AW704056
genomic: ACATCGCTCTTGAAGAGCTCAACCGCTTGAAGGAAATCATTGACTCAAAGgttgttcttg ... tttgttgcagAATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCAT
EST: ACATCGCTCTTGAAGAGCTCAACCGCTTGAAGGAAATCATTGACTCAAAG AATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCATEST: gi|16105694|gb|BI893434.1|BI893434
genomic: ACATCGCTCTTGAAGAGCTCAACCGCTTGAAGGAAATCATTGACTCAAAGgttgttcttg ... tttgttgcagAATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCAT
EST: ACATCGCTCTTGAAGAGCTCAACCGCTTGAAGGAAATCATTGACTCAAAG AATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCATEST: gi|10709957|gb|BF009681.1|BF009681
genomic: ACATCGCTCTTGAAGAGCTCAACCGCTTGAAGGAAATCATTGACTCAAAGgttgttcttg ... tttgttgcagAATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCAT
EST: ACATCGCTCTTGAAGAGCTCAACCGCTTGAAGGAAATCATTGACTCAAAG AATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCATEST: gi|21888755|gb|BQ741968.1|BQ741968
genomic: ACATCGCTCTTGAAGAGCTCAACCGCTTGAAGGAAATCATTGACTCAAAGgttgttcttg ... tttgttgcagAATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCAT
EST: GCTTGAAGGAAATCATTGACTCAAAG AATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCAT
genomic: GCTTGAAGGAAATCATTGACTCAAAGgttgttcttg ... tttgttgcagAATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTGCATTGTGGGGGAAGCTGGCAGCTGAAATTTTGATGCAGAACTGGGACATCGCTCTTGAAGAGCTCAACCGCTTGAAGGAAATCATTGACTCAAAGgttgttcttgtttgtcagttggtctttggagtagatgcatgttcttgtttgttgtgcttaaaatatttaatatagactggtggtgaactttgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA