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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGAAGCTGTTTTGTGATAAAGACTACCCAGAAAAGCCCCCAAGTGTTCGGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcatttataatttttcacatgctttcattttataaatatctttgtgcagtgcatgctgggacatataaaatgtgctaataacagtgtttttcctctt...

Basic information

species Glycine max
transcript GLYMA10G09280.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G09280.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0007g02580.t01 (Vitis vinifera), 5'ss of exon 3
ATTGAAGCTGTTTTGTGATAAAGACTACCCAGAAAAGCCCCCAAGTGTTCGGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcatttataatttttcacatgct--ttcattttataaatatctttgtgcagtgc--atgctgggacatataaaatgtgctaataacagtgtttttcctctt
 ||||||||||| ||||| ||||| || ||||| ||||| |||||||| || |||||||||||  ||||||||||||||||||| ||||||||||||||||||  ||||  |    || ||||  |  ||  | || | |     ||  |||| ||    || |    |  ||   |  || | ||  |    || |       
GTTGAAGCTGTTCTGTGACAAAGATTATCCAGAGAAGCCACCAAGTGTCCGTTTTCATTCACGGATCAACATGACTTGTGTTAACCATGAAACTGGAGTGgtaaaattttgatccctttacattataattggtcttgttatgcagttgttgcactggtggtgtttatgctcattgtagttgatgatctccagattctcag----

upper sequence: GLYMA10G09280.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ33318 (Selaginella moellendorffii), 5'ss of exon 3
ATTGAAGCTGTTTTGTGATAAAGACTACCCAGAAAAGCCCCCAAGTGTTCGGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtat-catttataatttttcacatgctttcattttataaatatctttgtgcagtgcatgctgggacatataaaatgtgctaataacagt-gtttttcctctt----
| | ||| |||  || || |||||||| || || ||||| |||||||| || || ||||| ||| ||||||||||||| |||||||  || |||||||  |||  || |   | ||| |  | ||  ||  |  | ||      ||| ||  ||     || |   || | |  |||||    | || | | ||||  | ||    
ACTTAAGTTGTACTGCGACAAAGACTATCCGGATAAGCCACCAAGTGTGCGATTCCATTCGCGAATCAACATGACTTGCGTTAATCGCGAGACTGGAGCTgtaagcactcgcattttgtttcttggctttgtggtctag-----tttctggtgtttccactagtg-atcttacttgtgcagtaagcactcgctttttttttttgca

upper sequence: GLYMA10G09280.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ15952 (Selaginella moellendorffii), 5'ss of exon 3
ATTGAAGCTGTTTTGTGATAAAGACTACCCAGAAAAGCCCCCAAGTGTTCGGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtat-catttataatttttcacatgctttcattttataaatatctttgtg-cagtgcatgctgggacatataaaatgtgctaataacagtgtttttcctctt
  | ||| |||  || || |||||||| || || ||||| |||||||| || || ||||| ||| ||||||||||||| |||||||  || |||||||  |||  || |   | ||| |  | ||  ||  |  | ||  |     |||  |      || |   || | |  | |  ||      |      | |  ||  
GCTTAAGTTGTACTGCGACAAAGACTATCCGGATAAGCCACCAAGTGTGCGATTCCATTCGCGAATCAACATGACTTGCGTTAATCGCGAGACTGGAGCTgtaagcactcgcattttgtttcttggctttgtggtctagtttctggtgtttccactagtgatcttacttgtgcagtaagcactcggcctccggtgttttc--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8827200|gb|BE210930.1|BE210930
EST:     GTTTCATTCACGAGTCAACATGACTTGTGTGTA-TCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGACTTCTTGCAGATGGGCAAAGAGAGTACACC
genomic: GTTTCATTCACGAGTCAACATGACTTGTGT-TAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|192294086|gb|FG986175.1|FG986175
EST:     GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|209699482|gb|BW667670.1|BW667670
EST:     GGTTTCATTCACGAATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|13563351|gb|BG551571.1|BG551571
EST:     GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAG
genomic: GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAG
EST: gi|192328578|gb|FK023568.1|FK023568
EST:     GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|17022747|gb|BM093781.1|BM093781
EST:     GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|15662585|gb|BI699948.1|BI699948
EST:     GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|209710537|gb|BW662073.1|BW662073
EST:     GGTTTCATTCACGAATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|21677270|gb|BQ629621.1|BQ629621
EST:     GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|7690948|gb|AW759084.1|AW759084
EST:     GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|7284283|gb|AW596878.1|AW596878
EST:     GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|15664086|gb|BI701457.1|BI701457
EST:     GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|209710536|gb|BW662072.1|BW662072
EST:     GGTTTCATTCACGAATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|151393123|gb|EV262998.1|EV262998
EST:     GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|192307166|gb|FK001194.1|FK001194
EST:     GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|209724946|gb|BW669636.1|BW669636
EST:     GGTTTCATTCACGAATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|4314038|gb|AI461157.1|AI461157
EST:     GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGA
genomic: GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGA
EST: gi|209724945|gb|BW669635.1|BW669635
EST:     GGTTTCATTCACGAATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|151398431|gb|EV268302.1|EV268302
EST:     GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|192307167|gb|FK001195.1|FK001195
EST:     GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|23733678|gb|BU765045.1|BU765045
EST:     GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|6482623|gb|AW201868.1|AW201868
EST:     GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|6847781|gb|AW350071.1|AW350071
EST:     GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|7283899|gb|AW596500.1|AW596500
EST:     GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|254339698|gb|GR857823.1|GR857823
EST:     GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|192294192|gb|FG986281.1|FG986281
EST:     GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|18041024|gb|BM309318.1|BM309318
EST:     GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|27426289|gb|CA937809.1|CA937809
EST:     GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|254339699|gb|GR857824.1|GR857824
EST:     GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|192328579|gb|FK023569.1|FK023569
EST:     GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|20811443|gb|BQ295921.1|BQ295921
EST:     GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|209699481|gb|BW667669.1|BW667669
EST:     GGTTTCATTCACGAATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|4284934|gb|AI440843.1|AI440843
EST:     GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC