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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAGTgtaagtttgtaatggaattatatgtatatctatttttctcccaattcatttatgggtttatattgttgagttgaatttaatgtaggttatgtctattgtc...

Basic information

species Glycine max
transcript GLYMA10G07820.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G07820.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0007g03610.t01 (Vitis vinifera), 5'ss of exon 3
GTAGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAGTgtaagtt-tgtaatggaattatatgtat-atctatttttctcccaattcatttatgggtttatattgttgagttgaatttaatgtaggttatgtc-tattgtc-
|| || ||||||||||||||||| || ||||| || ||||| ||||| ||| ||||||| ||| || || | | || | || | ||||| | ||| || | ||| || || | || | | |
GTTGCTCCTTATGAACGTCCTGCGCTTAGCAAAGCCTACCTATTTCCTGAGGgtaagttatgtgat----ttgtgcgcatgaactccagaaatttaaattctaacctacatttgtacttctgaatttgataagtaacttgctacattgcagcaccc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209718426|gb|BW666238.1|BW666238
EST:     AGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAGT                         CCCCTGCTAGACTTCCTGGGTTCCATGTCTGTGTTGGAAGTGGAGGAGAAA
genomic: AGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAGTgtaagtttgt ... gattttgcagCCCCTGCTAGACTTCCTGGGTTCCATGTCTGTGTTGGAAGTGGAGGAGAAA
EST: gi|209707196|gb|BW656814.1|BW656814
EST:     AGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAGT                         CCCCTGCTAGACTTCCTGGGTTCCATGTCTGTGTTGGAAGTGGAGGAGAAA
genomic: AGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAGTgtaagtttgt ... gattttgcagCCCCTGCTAGACTTCCTGGGTTCCATGTCTGTGTTGGAAGTGGAGGAGAAA
EST: gi|213595751|gb|DB955927.1|DB955927
EST:     AGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAGT                         CCCCTGCTAGACTTCCTGGGTTCCATGTCTGTGTTGGAAGTGGAGGAGAAA
genomic: AGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAGTgtaagtttgt ... gattttgcagCCCCTGCTAGACTTCCTGGGTTCCATGTCTGTGTTGGAAGTGGAGGAGAAA
EST: gi|209697959|gb|BW673018.1|BW673018
EST:     AGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAGT                         CCCCTGCTAGACTTCCTGGGTTCCATGTCTGTGTTGGAAGTGGAGGAGAAA
genomic: AGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAGTgtaagtttgt ... gattttgcagCCCCTGCTAGACTTCCTGGGTTCCATGTCTGTGTTGGAAGTGGAGGAGAAA
EST: gi|213615151|gb|DB963363.1|DB963363
EST:     AGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAGT                         CCCCTGCTAGACTTCCTGGGTTCCATGTCTGTGTTGGAAGTGGAGGAGAAA
genomic: AGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAGTgtaagtttgt ... gattttgcagCCCCTGCTAGACTTCCTGGGTTCCATGTCTGTGTTGGAAGTGGAGGAGAAA
EST: gi|192327629|gb|FK021306.1|FK021306
EST:     AGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAGT                         CCCCTGCTAGACTTCCTGGGTTCCATGTCTGTGTTGGAAGTGGAGGAGAAA
genomic: AGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAGTgtaagtttgt ... gattttgcagCCCCTGCTAGACTTCCTGGGTTCCATGTCTGTGTTGGAAGTGGAGGAGAAA
EST: gi|209697684|gb|BW655585.1|BW655585
EST:     AGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAGT                         CCCCTGCTAGACTTCCTGGGTTCCATGTCTGTGTTGGAAGTGGAGGAGAAA
genomic: AGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAGTgtaagtttgt ... gattttgcagCCCCTGCTAGACTTCCTGGGTTCCATGTCTGTGTTGGAAGTGGAGGAGAAA
EST: gi|254340648|gb|GR854376.1|GR854376
EST:     AGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAGT                         CCCCTGCTAGACTTCCTGGGTTCCATGTCTGTGTTGGAAGTGGAGGAGAAA
genomic: AGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAGTgtaagtttgt ... gattttgcagCCCCTGCTAGACTTCCTGGGTTCCATGTCTGTGTTGGAAGTGGAGGAGAAA
EST: gi|209701293|gb|BW653036.1|BW653036
EST:     AGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAGT                         CCCCTGCTAGACTTCCTGGGTTCCATGTCTGTGTTGGAAGTGGAGGAGAAA
genomic: AGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAGTgtaagtttgt ... gattttgcagCCCCTGCTAGACTTCCTGGGTTCCATGTCTGTGTTGGAAGTGGAGGAGAAA
EST: gi|192300239|gb|FG989361.1|FG989361
EST:     AGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAGT                         CCCCTGCTAGACTTCCTGGGTTCCATGTCTGTGTTGGAAGTGGTGGAGAAA
genomic: AGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAGTgtaagtttgt ... gattttgcagCCCCTGCTAGACTTCCTGGGTTCCATGTCTGTGTTGGAAGTGGAGGAGAAA
EST: gi|21676903|gb|BQ629254.1|BQ629254
EST:     AGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAGT                         CCCCTGCTAGACTTCCTGGGTTCCATGTCTGTGTTGGAAGTGGAGGAGAAA
genomic: AGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAGTgtaagtttgt ... gattttgcagCCCCTGCTAGACTTCCTGGGTTCCATGTCTGTGTTGGAAGTGGAGGAGAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTAGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAGTgtaagtttgtaatggaattatatgtatatctatttttctcccaattcatttatgggtttatattgttgagttgaatttaatgtaggttatgtctattgtc

- - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctccc