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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTGAAGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattatttaattgaaatgtttttaaagatgaaacaacacatataggcatcctgaacttgttaaatcagaattaacattggcatcaatgattctggtta...

Basic information

species Glycine max
transcript GLYMA10G07680.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G07680.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g59990.1 (Oryza sativa), 5'ss of exon 4
TTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTGAAGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtg-attatttaattgaaatgtttttaaagat-gaaacaacacatataggcatcc--tgaacttgt-taaatcagaattaacattggcatcaatgattctggtta
||| |||||||| ||||||||||| ||| | || ||||||||| |  |||||||  | ||||| |||||||| || |||||||| ||||| |||||||||||| |  ||||   | | ||   || | | || |  |          | |||  |    || |    ||  || |   | || |    || ||| |         
TTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTGAAGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacattttcatcagattcattcatatattggcattctctgcccatgcaatcaacaaattcccctatttctgtgcttacgt-aatataaataacatgt----

upper sequence: GLYMA10G07680.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os05g40820.3 (Oryza sativa), 5'ss of exon 4
TTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTGAAGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattatttaattgaaatgtttttaaagatgaaacaacacatataggcatcctg-aacttgttaaatcagaa---ttaacattggcatcaatgattctggtta
 ||||| ||||| ||||| ||||| ||| | || ||||||||| |  |||||||  ||||||| |||||||| || |||||||| ||||| |||||||||||    |||  ||  | || |         |      ||  ||||   ||| ||  |||| | | |     ||   ||    ||    ||| |||   | | | 
CTTCCTTTTTGCAAACTCAAAATGCAAGCGCTACTTCCACAACCGCCTGAAGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAGgt----attgtatctagatttaggcgggcgttttctcacctatatgcacatactctaactggatgacctttaacccttttttttttgttcactgaccgttgctt

upper sequence: GLYMA10G07680.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os07g12250.1 (Oryza sativa), 5'ss of exon 4
TTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTGAAGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattatttaattgaaatgtttttaaagatgaaacaacacatata-ggcatcctgaacttgttaaatcagaattaacattggcatcaatgattctggtta-----
 ||||||||| | |||||||| || ||| | || ||||||||| |  |||||||| | ||||| || ||||| || |||||||||||||| |||||||||||       | | ||| |  |  ||       | |   ||| |  | ||  || || ||   |    |      |   | ||   | |   |  || |||      
GTTCCTGTTTTCAAACTCGAAGTGCAAGCGCTACTTCCACAACCGTCTGAAGCCAGCCAAGCTTACATGGACAGCCATGTACAGAAAGCAGCACAAGAAGgta------tgagtgacaattccttgtcatccatatttcacttggaaggtttcttgtaccgatggtctgttgcctgtgaatgtgctgagacaaacttgttggaaca

upper sequence: GLYMA10G07680.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G074898_T03 (Zea mays), 5'ss of exon 4
TTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTGAAGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtg-attatttaattgaaatgtttttaaagatgaaacaacacatataggcatcctgaacttgttaaatca---gaattaacattggcatcaatgattctggtta
|||||| ||||| ||||||||||| ||| | || ||||||||| |  |||||||  ||||||| |||||||| ||||||||||| ||||| |||||||||||   | || | |   |      |||    | ||    |  |||  |    || |  | ||   |   |    |  |  | | | ||  || |  | |||    
TTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTGAAGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgatattacctagccaactttcttaaggatgtcatccattcatttctcttatagtttccatgccttttggttatagaatagctacagttttcctg----

upper sequence: GLYMA10G07680.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G142640_T02 (Zea mays), 5'ss of exon 5
TTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTGAAGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtg-attatttaattgaaatgtttttaaagatgaaacaacacatataggcatcctgaacttgttaaatcagaattaacattggcatcaatgattctggtta--
 ||||| ||||| ||||||||||| ||| | || ||||||||| |  |||||||  ||||||| |||||||| ||||||||||| ||||| |||||||||||   | || | |          || ||  |  |    |  |||  |     | |    |  ||  ||     ||     | | || |    ||| | ||   
CTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTGAAGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgatattacccggccaacttcaataagaatgtcattcattcatttcccttatgatgattccatgctttttggttatag-attagc--ttcagctttct

upper sequence: GLYMA10G07680.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G110328_T03 (Zea mays), 5'ss of exon 4
TTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTGAAGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtg-attatttaattgaaatgtttttaaagatgaaacaacacatataggcatcctgaacttgttaaatcagaatta-acattggcatcaatgattctggtta
|||||| ||||| ||||| ||||| ||| | || ||||||||| |  |||||||  ||||||| |||||||| ||||||||||| ||||| |||||||||||   | || |     |      |||||  |||  |   ||   |      |  |||     |    |     ||| | ||| ||  ||    |||| ||  
TTTCCTTTTTGCCAACTCAAAATGCAAGCGCTACTTCCACAACCGCCTGAAGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgatatttcccagtcaactttaagaatgtcatc-cattcacttctcttgtgattccatgcttttttggttatatattagctacagcttttcttgta-

upper sequence: GLYMA10G07680.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G36620.1 (Arabidopsis thaliana), 5'ss of exon 3
TTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTGAAGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgat--tatttaattgaaatgtttttaaag---atgaaacaacacatataggcatcctgaacttgttaaatcagaattaacattggcatcaatgattctggtta
 ||  |||||   ||||| ||||||||||||||||||||||||| |||||||||||| |||||   ||||||||| |||||| ||||||| ||||||||||| ||  |  ||  || |  || || |       ||||   |  || ||| |  || |||   |||| |  |  |  ||  |  |     ||             
GTTTTTGTTTCTCAACTCCAAATGTAAGAGGTATTTCCACAACAAGTTGAAGCCATCTAAGCTTTGCTGGACTGCTATGTACCGAAAGCAGCACAAGAAGgtaatgtttctttttttagttgcttcttgttttcatgatttagtac-tattga-attctg---ttgtgatctttgttttctctcttcttacag------------

upper sequence: GLYMA10G07680.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G53020.1 (Arabidopsis thaliana), 5'ss of exon 3
TTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTGAAGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattatttaattgaaatgtttttaaagatgaaacaacacatataggcatcctgaacttgttaaatcagaattaacattggcat-caatgattctggtta--------
|||| |||||  |||||| |||||||||||||| ||||| |||| |||||||||||| |||||  | |||||||| |||||||||||||||||||||||||| |  |   || | |    |||    |  ||          | ||       |    |  || |  | || ||    ||  ||| | |  | |||| ||         
TTTCTTGTTTCTTAACTCAAAATGTAAGAGGTACTTCCATAACAAGTTGAAGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAGgtaaaaaaaaaactcagtaattt--ggatctgttttgttgtttgtactttgttttttttcattgatcctgatttg---ttaacattctaaaactctgtttcttttatag

upper sequence: GLYMA10G07680.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0074g00140.t01 (Vitis vinifera), 5'ss of exon 3
TTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTGAAGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtga----ttatttaattgaaatgtttttaaagatgaaacaac-acatatag--gcatcctgaacttgttaaatcagaattaacat-tggcatcaatgattctggtta---
 || || ||||| || || ||||| ||||| || || |||||| |  | ||||| |||||||| |||||||| || ||||| ||||||||||| |||||||||     |  ||||||   | |   || |  ||  |     | | ||  ||  | ||| ||   |||   | |   ||||  | | |  |||| || || |   | |   
ATTTCTATTTGCCAATTCAAAATGCAAGAGATACTTTCACAACCGACTTAAGCCTTCAAAGCTTACCTGGACGGCTATGTATAGAAAGCAACATAAGAAGgtggaatgtcttttaatgatacttcattcattgaaaagtttgctatatgcagctgtatcatgtggttggacattacaaattttcttctttcatctat-atgcaactcacag

upper sequence: GLYMA10G07680.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0007g04210.t01 (Vitis vinifera), 5'ss of exon 3
TTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTGAAGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattatttaattgaaatgtttttaaagatgaaacaacacatataggcatcctgaacttgttaaatcagaattaacattggcatcaatgattctggtta--
 || || ||||| || || ||||| |||||||| ||||||||| || |||||||||||||||| |||||||| || |||||||| |||||||| || |||||     || || |   |||| || ||   | |     || || | || |   ||    |||  | |   |  | |||      |  |  |  |  | ||  
GTTTCTATTTGCCAATTCAAAATGCAAGAGGTACTTCCACAACCGGCTGAAGCCATCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAACATAAAAAGgtagcacttgaaataccatgtattcaatttt-atgtggcatatgtcggtactgtgtgtgtgtgcattttcagattacaggatttttgacaaa-caagctact

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9204099|gb|BE330323.1|BE330323
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|6848156|gb|AW350446.1|AW350446
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|209729426|gb|BW663687.1|BW663687
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|208041349|gb|GD838606.1|GD838606
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAG
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAG
EST: gi|298178215|gb|HO023950.1|HO023950
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|192311451|gb|FK005182.1|FK005182
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCGACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|298184907|gb|HO030120.1|HO030120
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|254338509|gb|GR849927.1|GR849927
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|209725927|gb|BW654752.1|BW654752
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|298170088|gb|HO018712.1|HO018712
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|209717027|gb|BW682315.1|BW682315
EST:     ACTGCAATGTACAGAAAGCAACACAAGAAG                         GNCATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: ACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|254338510|gb|GR849928.1|GR849928
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|209725928|gb|BW654753.1|BW654753
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|254330682|gb|GR841947.1|GR841947
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|254326104|gb|GR840696.1|GR840696
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|298174457|gb|HO014602.1|HO014602
EST:     AGCCATCGAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|308097945|gb|HO761116.1|HO761116
EST:     ACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: ACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|254319112|gb|GR828840.1|GR828840
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|58015011|gb|CX701753.1|CX701753
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|209712106|gb|BW676723.1|BW676723
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCC-AAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|38193719|gb|CF922925.1|CF922925
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|208061423|gb|GD860117.1|GD860117
EST:     ATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: ATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|298191792|gb|HO035874.1|HO035874
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|57574313|gb|CX547288.1|CX547288
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|254331670|gb|GR846087.1|GR846087
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|192327707|gb|FK020698.1|FK020698
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|151409976|gb|EV279784.1|EV279784
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACATGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|38192454|gb|CF921660.1|CF921660
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|209717026|gb|BW682314.1|BW682314
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|213616688|gb|DB971227.1|DB971227
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|19452701|gb|BM954111.1|BM954111
EST:     AGCCATCAAAGCTCACCTGGACTTTTATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAACAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|7685149|gb|AW755797.1|AW755797
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|254330683|gb|GR841948.1|GR841948
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|207823078|gb|GD794887.1|GD794887
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|151411689|gb|EV281500.1|EV281500
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|13791093|gb|BG653684.1|BG653684
EST:     GCAACACAAGAAG                         GACATTGCTCAAGAAGCTGT-AATTAAAAGAAGACGTGCTGCCAAAAAGCC
genomic: GCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAA-GAAAAGAAGACGTGCTGCCAAAAAGCC
EST: gi|41146259|gb|CK606470.1|CK606470
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|209723426|gb|BW651354.1|BW651354
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|9203421|gb|BE329574.1|BE329574
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|17400652|gb|BM177434.1|BM177434
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|10709290|gb|BF009014.1|BF009014
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|120532385|gb|EH260518.1|EH260518
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|192311450|gb|FK005181.1|FK005181
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCGACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|209729425|gb|BW663686.1|BW663686
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|209713440|gb|BW681481.1|BW681481
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|9986848|gb|BE660956.1|BE660956
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|41145786|gb|CK605997.1|CK605997
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|4396328|gb|AI495325.1|AI495325
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|192322283|gb|FK014524.1|FK014524
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|209713439|gb|BW681480.1|BW681480
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|208198276|gb|GD996417.1|GD996417
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|209712105|gb|BW676722.1|BW676722
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCC-AAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|11414163|gb|BF426174.1|BF426174
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|213603022|gb|DB958593.1|DB958593
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|23732092|gb|BU764201.1|BU764201
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|298179313|gb|HO027784.1|HO027784
EST:     AGCCATCAGAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|7042350|gb|AW472244.1|AW472244
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|213607624|gb|DB958643.1|DB958643
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|58025017|gb|CX711758.1|CX711758
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|298187108|gb|HO034257.1|HO034257
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCGAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
EST: gi|12774597|gb|BG239524.1|BG239524
EST:     AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAG                         GACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT
genomic: AGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattattt ... tgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTGAAGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGgtgattatttaattgaaatgtttttaaagatgaaacaacacatataggcatcctgaacttgttaaatcagaattaacattggcatcaatgattctggtta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG