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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAACAAGCAAAACCATGTATTCAAAAAGAATCCAAAGGCTCGTATTTGGGGTAAGCCTCCAAAAGTCATTGGCGGAAAGCTACTTGCTTCTGGTTATTGgtaagatttcatttatgttgaaattataggtttttaggtagagggaaaggagagaatagagtatcacattctgaaattgatcttcattatgatgttttac...

Basic information

species Glycine max
transcript GLYMA10G07580.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G07580.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G473533_T05 (Zea mays), 5'ss of exon 10
CAAACAAGCAAAACCATGTATTCAAAAAGAATCCAAAGGCTCGTATTTGGGGTAAGCCTCCAAAAGTCATTGGCGGAAAGCTACTTGCTTCTGGTTATTGgtaagatttcatttatgttgaaattataggtttttaggtagagggaaaggagagaatagagtatcacattctgaaattgatcttcattatgatgttttac----
| ||||||||||| ||||| ||||| ||| | || || |||| ||| ||||| || ||||| |||||  | || ||||||||||| || |||||||| |||||||     |||||||    ||| |     | |||   | |     |  |  | |    |||| |   |    | |||| | |    |   || |  ||    
CTAACAAGCAAAAACATGTGTTCAAGAAGGACCCCAAAGCTCCTATATGGGGAAAACCTCCCAAAGTTGTCGGGGGAAAGCTACTAGCATCTGGTTACTGgtaaggaca-atttatgcc--aatgaccctctgttaatcacattattatcattgtagcttgtatgatgcttccta-ttgaccctgccaacattgatgaacggta

upper sequence: GLYMA10G07580.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0007g03930.t01 (Vitis vinifera), 5'ss of exon 11
CAAACAAGCAAAACCATGTATTCAAAAAGAATCCAAAGGCTCGTATTTGGGGTAAGCCTCCAAAAGTCATTGGCGGAAAGCTACTTGCTTCTGGTTATTGgtaagatt-tcatttatgttgaaattataggtttttaggtagagggaaaggagagaatagagtatcacattctgaaattgatcttcattatgatgttttac--
| ||||| ||||| || || || || |||||||| ||||| | |||||||||||||||||||| ||| ||||| |||||| | ||||| ||||||||||||||||||| |||||    |    ||  |   || ||    | |   |       |  || | | | |    ||   |||| | ||  ||      |||||   
CTAACAAACAAAAGCACGTGTTTAAGAAGAATCCCAAGGCACTTATTTGGGGTAAGCCTCCAAGAGTTATTGGGGGAAAGTTGCTTGCGTCTGGTTATTGgtaagattctcattatcatcctcatcttt--ttctttttcatattcatcctcatgtttatattgttatgc-ctattattgttattgttttcttctttttattc