Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCAGCCTATGCTCATGCTTGGAATCACTGTTGGTGTTGCTCTCAGTGTTGTCTTCCCTTACTGGCTTATCACTGTTCTCATCATCATTCTCTTCATAGgtcagtgtaataactaaaaaaaatacttccaattttgaatagtcaatttttaggccacagtcatagaacaatgttttagtctcattttttgaaaaaaagaaattggtattttttattgttgttcag

Basic information

species Glycine max
transcript GLYMA10G07420.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G07420.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os03g51650.1 (Oryza sativa), 5'ss of exon 3
TTCCAGCCTATGCTCATGCTTGGAATCACTGTTGGTGTTGCTCTCAGTGTTGTCTTCCCTTACTGGCTTATCACTGTTCTCATCATCATTCTCTTCATAGgtcagtgtaataactaaaaaaaatacttccaattttgaatagtcaatttttaggccacagtcatagaacaatgttttag-tctcattttttgaaaaaaagaaattggtattttttattgttgttcag
|||||||| ||||||||||| || |||||  | || || |  ||||| ||  ||||||| |||||||| ||||| || |||||||| || ||||||||||||  ||   | | |||| |||  |  |   ||    ||   | |  ||||  |||      | | |       | | || || |     ||||      |   |||||    || || | | | |||
TTCCAGCCCATGCTCATGCTCGGGATCACAATCGGAGTCGAGCTCAGCGTCATCTTCCCCTACTGGCTCATCACCGTCCTCATCATAATCCTCTTCATAGgtttgt---acagctaacaaatgtgttgttaagcacgatctggcgcttttgtggcgctgtcctttgcgtgccctgtgagatcgctgagattgatgt---gtgtttggtgcgcttgatcgat-tgcag

upper sequence: GLYMA10G07420.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0007g04230.t01 (Vitis vinifera), 5'ss of exon 3
TTCCAGCCTATGCTCATGCTTGGAATCACTGTTGGTGTTGCTCTCAGTGTTGTCTTCCCTTACTGGCTTATCACTGTTCTCATCATCATTCTCTTCATAGgtcagtgtaataactaaaaaaaatacttccaattttgaatagtcaatttttaggccacagtcatagaacaatgt--tttagtctcattttttgaaaaaaagaaattggta--------ttttttattgttgttcag---------------------
|||||||| |||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||| ||  | |||||||||||||| ||||| |||  |||| | |     |     |  ||||||| || | |  |   |||||   | |  |  | |   | |  |  |||    ||| | | ||  |  |  |  |  ||         | ||| |   || || |                      
TTCCAGCCCATGCTCATGCTTGGGATCACTGTTGGAGTAGCTCTCAGTGTTGTCTTCCCTTACTGGCTTATAACCATCCTCATCATCATTCTGTTCATGGgt--gtgtcaaattctcatccctttattccaatgttaactttttttttttttatcaatcggtagatccccagatcatttgtcatcagtatatgttacgataatctctgtcaagatgattctttcaaatttattgaataatttatgactctggatcag