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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGTATGCTTTTCACTATGCCAAGGCTCATGGAAGAGAGAGGGTTTCTGCCATACACAAAGCCAATATTATGCAAAAGACTGATGGCCTTTTCCTCAAGgtccaccaatacatataaatgcctataaatttttggtctcaaattttattcatgaattttattaacacttttttttttaaaaaaaaattatttatag

Basic information

species Glycine max
transcript GLYMA10G06590.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G06590.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g16900.2 (Oryza sativa), 5'ss of exon 3
TGAGTATGCTTTTCACTATGCCAAGGCTCATGGAAGAGAGAGGGTTTCTGCCATACACAAAGCCAATATTATGCAAAAGACTGATGGCCTTTTCCTCAAGgtccacc-aatacatataaatgcctataaatttttggtctcaaat--tttattcatgaattttattaacacttttttttttaaaaaa-aaattatttatag
 ||||||||||| |||||||||||| |  ||||  | |||||||| ||||| |||||||| |||||||| |||   ||||| ||||| |||||||||||||||       ||| | |   | | | ||| ||  |||  |  | |  || ||||||     |         | || | |||          ||| ||  ||
AGAGTATGCTTTCCACTATGCCAAGACCAATGGCCGGGAGAGGGTCTCTGCGATACACAAGGCCAATATCATGAGGAAGACCGATGGTCTTTTCCTCAAGgtctgtttgctacctgt---tccttctaacttgatggaatgtattccttaattcatatcactgggagctgatgttctgtttgttctttgttttactttcag

upper sequence: GLYMA10G06590.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G404855_T01 (Zea mays), 5'ss of exon 4
TGAGTATGCTTTTCACTATGCCAAGGCTCATGGAAGAGAGAGGGTTTCTGCCATACACAAAGCCAATATTATGCAAAAGACTGATGGCCTTTTCCTCAAGgtccaccaatacatataaatgcctataaatttttggtct-caaattttattcatgaattttattaacacttttttttttaaaaaaaaat-tatttatag
 || ||||||||||| |||||||||||  ||||  | || ||||| ||||| || ||||| ||||||||||||   ||||| ||||| ||||||||||||||            ||   | |||     ||  |  |      ||||  ||       ||| | |||   | |||| || |     | | || || |||
AGAATATGCTTTTCATTATGCCAAGGCCAATGGCCGGGAAAGGGTCTCTGCGATTCACAAGGCCAATATTATGAGGAAGACAGATGGTCTTTTCCTCAAGgtttgtggtctaccattgtttccttctttttcatcatggatgcatttctttttctttctttctgaacttatgttttcttgatttttattgtacttgtag

upper sequence: GLYMA10G06590.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G120857_T02 (Zea mays), 5'ss of exon 4
TGAGTATGCTTTTCACTATGCCAAGGCTCATGGAAGAGAGAGGGTTTCTGCCATACACAAAGCCAATATTATGCAAAAGACTGATGGCCTTTTCCTCAAGgtccaccaatacatataaatgcctataaatttttggtctcaaattttattcatg--aattttattaacactttt--ttttttaaaaaaaaatt--atttatag
 ||||||||||| || |||||||||||  ||||  | || || || ||||| || ||||||||||||||||||   ||||| ||||| |||||||||||||||          ||  | ||  |    ||||||  ||    ||    ||| |   | || | | |  |||| |  ||| || |      |||  | || |||
AGAGTATGCTTTCCATTATGCCAAGGCCAATGGCCGGGAAAGAGTCTCTGCGATCCACAAAGCCAATATTATGAGGAAGACAGATGGTCTTTTCCTCAAGgtctgtgggc---taccattgtttccttatttttaatcatggatgcctttcgttttatttctttgagaacttatgctttcttgattttttattgtacttgtag

upper sequence: GLYMA10G06590.2 (Glycine max), 5'ss of exon 3
lower sequence: AT5G03290.1 (Arabidopsis thaliana), 5'ss of exon 3
TGAGTATGCTTTTCACTATGCCAAGGCTCATGGAAGAGAGAGGGTTTCTGCCATACACAAAGCCAATATTATGCAAAAGACTGATGGCCTTTTCCTCAAGgtccacca-----atacatataaatgcctataaatttttggtctcaaattt-tattcatgaattttattaacacttttttttttaaaaa-------aaaattatttatag------------------
 ||||||||||||| |||||||||| |||||||||||||||| |||||||| || ||||||||||| |||||||| || ||||| || || || |||||||||  ||      |||  |  ||     | | |      ||  |||||    |  |  | | || |  ||    ||||||||||| |          | |  |||| ||                   
AGAGTATGCTTTTCTCTATGCCAAGACTCATGGAAGAGAGAGAGTTTCTGCTATCCACAAAGCCAACATTATGCAGAAAACTGACGGTCTCTTTCTCAAGgtctgcccgttttataactccaagcatttcttatacggagggatcaaagcaatgattgttatttctgctagtttttttttttttacattttgttctgagaccatttttattttgcttccgtttttcag

upper sequence: GLYMA10G06590.2 (Glycine max), 5'ss of exon 3
lower sequence: AT3G09810.1 (Arabidopsis thaliana), 5'ss of exon 3
TGAGTATGCTTTTCACTATGCCAAGGCTCATGGAAGAGAGAGGGTTTCTGCCATACACAAAGCCAATATTATGCAAAAGACTGATGGCCTTTTCCTCAAGgtccaccaat-------------acatataaatgcctataaatttttggt-ctcaaattttattcatgaattttattaacactttttttttta----------aaaaaaaattatttatag---------------
 |||||||| ||||  ||||||||| |||| |||||  |||  |||||||| || ||||||||||| |||||||| || |||||||| ||||||||  |||||  |  ||             | | || |   | | | ||||   ||  |  |    || |||  |  | | | |  |   ||||| || |           | | || || ||  | |               
CGAGTATGCCTTTCTTTATGCCAAGACTCACGGAAGGAAGAAAGTTTCTGCAATTCACAAAGCCAACATTATGCAGAAAACTGATGGTCTTTTCCTGCAGgtcagctcattttggaactcagaatacattagcacttctcaattaggggaacatagcaatttttctagtctctcactggcttctttttcttaacctttgttctgagacaagtttttatttgcttcctgctttgcag

upper sequence: GLYMA10G06590.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0040g01700.t01 (Vitis vinifera), 5'ss of exon 3
TGAGTATGCTTTTCACTATGCCAAGGCTCATGGAAGAGAGAGGGTTTCTGCCATACACAAAGCCAATATTATGCAAAAGACTGATGGCCTTTTCCTCAAGgtccaccaatacatataaatgcctataaatttttggtctcaaattttattcatgaattttattaacac---ttttttttttaaaaaaaaattatttatag
||||||||| ||||||||||||||| | ||||||||||||||||| || || |||||||||||||| || ||||| |||||||||||||| || || |||||   |   |||    |||||| ||    | | | |  | |   ||||   ||| ||  || |||      |||| | |||       |           
TGAGTATGCATTTCACTATGCCAAGACCCATGGAAGAGAGAGGGTATCCGCAATACACAAAGCCAACATCATGCAGAAGACTGATGGCCTCTTTCTTAAGgttgtctgttac----aaatgcttaactttatgttgcataatcatttacctatgcatcctactaaggtgagttttctctttgtgttgcag----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192328451|gb|FK020725.1|FK020725
EST:     CCATACACAAAGCCAATATTATGCAAAAGACTGATGGCCTTTTCCTCAAG                         TGTTGCCGTGAGGTTGCAGAGAAATATCCTGAGATAACTTATGAG-AAGTT
genomic: CCATACACAAAGCCAATATTATGCAAAAGACTGATGGCCTTTTCCTCAAGgtccaccaat ... ttatttatagTGTTGCCGTGAGGTTGCAGAGAAATATCCTGAGATAACTTATGAGGAAGTT