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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAGgtaatacacttgatctgaattattgaatttcacgtcacagattcttgctttactaattaatatcatgaaaatgctgacaaagagagggggaaaaaagaaagggatggaaatgcacatttcataatgatgattcctataatttcctttttggcag

Basic information

species Glycine max
transcript GLYMA10G06580.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8284137|gb|BE021696.1|BE021696
EST:     GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAG                         GTGCTACTCAGAATTCAATCAGGGTTGCTCAG
genomic: GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAGgtaatacact ... tttttggcagGTGCTACTCAGAATTCAATCAGGGTTGCTCAG
EST: gi|6454402|gb|AW185085.1|AW185085
EST:     GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAG                         GTGCTACTCAGAATTCAATCAGGGTTGCTCAG
genomic: GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAGgtaatacact ... tttttggcagGTGCTACTCAGAATTCAATCAGGGTTGCTCAG
EST: gi|213618065|gb|DB963698.1|DB963698
EST:     GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAG                         GTGCTACTCAGAATTCAATCAGGGTTGCTCAG
genomic: GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAGgtaatacact ... tttttggcagGTGCTACTCAGAATTCAATCAGGGTTGCTCAG
EST: gi|17022031|gb|BM093065.1|BM093065
EST:     GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAG                         GTGCTACTCAGAATTCAATCAGGGTTGCTCAG
genomic: GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAGgtaatacact ... tttttggcagGTGCTACTCAGAATTCAATCAGGGTTGCTCAG
EST: gi|209709321|gb|BW680986.1|BW680986
EST:     GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAG                         GTGCTACTCAGAATTCAATCAGGGTTGCTCAG
genomic: GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAGgtaatacact ... tttttggcagGTGCTACTCAGAATTCAATCAGGGTTGCTCAG
EST: gi|12690012|gb|BG156348.1|BG156348
EST:     GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAG                         GTGCTACTCAGAATTCAATCAGGGTTGCTCAG
genomic: GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAGgtaatacact ... tttttggcagGTGCTACTCAGAATTCAATCAGGGTTGCTCAG
EST: gi|151394548|gb|EV264419.1|EV264419
EST:     GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAG                         GTGCTACTCAGAATTCAATCAGGGTTGCTCAG
genomic: GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAGgtaatacact ... tttttggcagGTGCTACTCAGAATTCAATCAGGGTTGCTCAG
EST: gi|5606299|gb|AI900405.1|AI900405
EST:     GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAG                         GTGCTACTCAGAATTCAATCAGGGTTGCTCAG
genomic: GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAGgtaatacact ... tttttggcagGTGCTACTCAGAATTCAATCAGGGTTGCTCAG
EST: gi|120531830|gb|EH259963.1|EH259963
EST:     GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAG                         GTGCTACTCAGAATTCAATCAGGGTTGCTCAG
genomic: GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAGgtaatacact ... tttttggcagGTGCTACTCAGAATTCAATCAGGGTTGCTCAG
EST: gi|19936079|gb|BQ080713.1|BQ080713
EST:     GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAG                         GTGCTACTCAGAATTCAATCAGGGTTGCTCAG
genomic: GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAGgtaatacact ... tttttggcagGTGCTACTCAGAATTCAATCAGGGTTGCTCAG
EST: gi|13125032|gb|BG315575.1|BG315575
EST:     GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAA                         GTGCTACTCACAATTCAATCAGGGTTGCTCAG
genomic: GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAGgtaatacact ... tttttggcagGTGCTACTCAGAATTCAATCAGGGTTGCTCAG
EST: gi|16105072|gb|BI892812.1|BI892812
EST:     GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAG                         GTGCTACTCAGAATTCAATCAGGGTTGCTCAG
genomic: GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAGgtaatacact ... tttttggcagGTGCTACTCAGAATTCAATCAGGGTTGCTCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAGgtaatacacttgatctgaattattgaatttcacgtcacagattcttgctttactaattaatatcatgaaaatgctgacaaagagagggggaaaaaagaaagggatggaaatgcacatttcataatgatgattcctataatttcctttttggcag

-  TGAAGA
- - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - GCTGGA