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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTCTATCCACTTCAGTAATTCAAATCCTACGTGCCATGCATTTGATCAGGATTCTAAGGACGGGCATGATTTGATCATTGGCTTGAATACTGGCGACGgtaactgaaaatgctttcactagaatttaaatttctattttggtaggaaaatttaaaatttatcaatttattcctatgtgtattattgtag

Basic information

species Glycine max
transcript GLYMA10G05890.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G05890.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G53390.1 (Arabidopsis thaliana), 5'ss of exon 3
AAGTCTATCCACTTCAGTAATTCAAATCCTACGTGCCATGCATTTGATCAGGATTCTAAGGACGGGCATGATTTGATCATTGGCTTGAATACTGGCGACGgtaactgaaaatgctttcactagaatttaaatttctattttggtaggaaaatttaaaatttatcaatttattcctatgtgtattattgtag
||||||||||| |||||||||||||| |||| ||| ||||| ||||||| |||| ||||||| |||||||| ||  | |||||  ||||| |||| || |||||   | ||   |     ||   |||  |   ||  | | |  |     | | |    | | | ||| ||   |||||  |||||||||
AAGTCTATCCATTTCAGTAATTCAAACCCTATGTGTCATGCTTTTGATCCGGATGCTAAGGATGGGCATGACTTACTTATTGGGCTGAATTCTGGGGATGgtaatgtagaaatttgagcttaccgttttcaccgctgatctagatgccttgtctcatggat-ttattttgttatgatgtg--ttattgtag

upper sequence: GLYMA10G05890.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0040g01960.t01 (Vitis vinifera), 5'ss of exon 3
AAGTCTATCCACTTCAGTAATTCAAATCCTACGTGCCATGCATTTGATCAGGATTCTAAGGACGGGCATGATTTGATCATTGGCTTGAATACTGGCGACGgtaactgaaaatgctttcactagaatttaaatttctattttggtag-gaaaatttaaaatttatcaatttattccta---tgtgtattattgtag
|||||||| || || |||||||| ||||||   || ||||||||||| | |||| ||||||| || ||||||||| | ||||| |||||| |||| || |||||   |||||   |||||| || ||| |||     ||||| |   | || |||| | |  || |||| | || |    | ||| || || |||
AAGTCTATACATTTTAGTAATTCGAATCCTGTTTGTCATGCATTTGACCCGGATGCTAAGGATGGACATGATTTGCTTATTGGGTTGAATTCTGGAGATGgtaa---aaaat---ttcacttgattttgaatcaaatttttgtttttggaagtttacactccatgaattgactcgttgtctttgtgtttttatag