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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATGTTCCCACTACCAAGCAGATAGCATCCTTAAATCTCAAAGAGGGTCAAAATTTGGTAACCTTCAGTTTCTCTACAAGGGTTCTCGGAACACAACAGgtttttgacatttattgatgttctaagttcctgtattaagtttaccagtggttggattttgtttaagagataaattttaattacataacag

Basic information

species Glycine max
transcript GLYMA10G05320.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G05320.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G09560.1 (Arabidopsis thaliana), 5'ss of exon 3
AAATGTTCCCACTACCAAGCAGATAGCATCCTTAAATCTCAAAGAGGGTCAAAATTTGGTAACCTTCAGTTTCTCTACAAGGGTTCTCGGAACACAACAGgttt-ttga------catttattgatgttctaagttc---ctgtattaagtttaccagtggttggattttgtttaagagataaattttaattacataacag
 ||||| || || |   | ||||| |||||  | ||||| ||||| ||||| ||| || |||| || |||||||| ||||| ||||| |||||||||||||||| ||||      ||||  ||||   | | |   |   | |    ||  |   |     || | || |  |||     |   | ||| |||| ||  ||
TAATGTCCCTACCAATGAACAGATCGCATCTCTGAATCTGAAAGATGGTCAGAATATGATAACATTTAGTTTCTCAACAAGAGTTCTTGGAACACAACAGgtttgttgatggttacattagttgaaaatttgaaagcacaccgaggaaaactcttctaactttagtttctaattactttttcgttgtta-ttacttattag

upper sequence: GLYMA10G05320.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0040g02800.t01 (Vitis vinifera), 5'ss of exon 2
AAATGTTCCCACTACCAAGCAGATAGCATCCTTAAATCTCAAAGAGGGTCAAAATTTGGTAACCTTCAGTTTCTCTACAAGGGTTCTCGGAACACAACAGgttt----ttgacattta---ttgatgttctaagttcc---tgtattaagtttaccagtgg---ttggattttgtttaagagataaattttaattacataacag
|||| | ||||| ||  ||||||| ||||| || || || ||||| ||||||||| |||||||||||||||||||||| |||||||| |||||||||||||| |    |||   | ||   || |  ||  || |||    ||||  |||| |    |  |   ||   |||    |   |   || |||   ||   | ||||
AAATATCCCCACCACTGAGCAGATTGCATCTTTGAACCTAAAAGAAGGTCAAAATATGGTAACCTTCAGTTTCTCTACCAGGGTTCTTGGAACACAACAGgtctgatattggtgtctaatattcaaatttcaatttcaatatgtaaaaagtctgttggatgcctttctgtttcaactgctaaggaactttcgcttt--tgacag