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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGATGGCCCAAAACTTGTGAGAGAACTTTTCAGAGTTGCCGATGATCTTTCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaacccccaactttagctgtcatgaaggtaccggggatggaagagtgatgccttgtatcactctatgagctcttgggattcttttcctacattcatgagcttaccagtaaatatgtatttacag

Basic information

species Glycine max
transcript GLYMA10G04920.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G04920.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os03g18690.1 (Oryza sativa), 5'ss of exon 3
GAGATGGCCCAAAACTTGTGAGAGAACTTTTCAGAGTTGCCGATGATCTTTCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaacccccaactttagctgtcatgaaggtaccggggatggaagagtgatgcct-tgtatcactctatgagctcttgggattcttttcctaca-ttcatgagcttaccagtaaatatgtatttacag--------
| |||||||| || ||||| |||||| | || || || || |||||||||||||| || ||||| || ||||| || || |||||||| || ||||| |||||   |  |   |  |||| |  ||    | | ||       ||| | || || ||  | ||||| | |  | ||    | |   |||   |   | | || ||  |  ||    | ||  | | |||            
GTGATGGCCCCAAGCTTGTAAGAGAATTGTTTAGGGTGGCTGATGATCTTTCTCCGTCAATTGTCTTTATTGACGAGATTGATGCAGTCGGAACAAAGAGgtagagt--agtgcatacttcaaatg----ggaagtcttctatatg-atgaatgttgtttgtgtat-agtaaaagattggtggaacttcccatgaaatagtttatatgagtattgatgaacttttttttttctccttatag

upper sequence: GLYMA10G04920.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G104373_T01 (Zea mays), 5'ss of exon 3
GAGATGGCCCAAAACTTGTGAGAGAACTTTTCAGAGTTGCCGATGATCTTTCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaacccccaactttagctgtcatgaaggtacc-ggggatggaagagtgatgccttgtatcactctatgagctcttgggattcttttcctacattcatgagcttaccagtaaatatgtatttacag
| ||||| || || ||||| |||||| | ||||| || || ||||||||||||||||| ||||| || |||||||| || ||||| ||||| ||||| ||||| | | |  |   ||  ||| | |   | |   |    ||  ||| || |  | ||   || |     || |   ||  |||     ||     |   | |  |||                        
GTGATGGTCCCAAGCTTGTTAGAGAATTGTTCAGGGTGGCTGATGATCTTTCTCCTTCAATTGTCTTTATTGATGAGATTGATGCTGTTGGGACAAAGAGgta-tatcagacatgaaagttaacagcagttattttctttggttatgaaaaaaagctgg--tgaaagggcctctagcctagtgg-----ttaaaggattctgagtagc------------------------

upper sequence: GLYMA10G04920.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G20140.1 (Arabidopsis thaliana), 5'ss of exon 3
GAGATGGCCCAAAACTTGTGAGAGAACTTTTCAGAGTTGCCGATGATCTTTCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaacccccaactttagctgtcatgaaggtaccggggatggaagagtgatgccttgtatcactctatgagctct-tgggattcttttcctacattcatgagcttaccagtaaatatgtatttacag
||||||| || || |||||||| ||||||||||| ||||| ||||| ||||||||||||||||| ||||| || || || ||||| ||||| || ||  ||||    |||   | ||| | | |    ||||     ||   |||  || | || | | |  | |  ||| |       | |   ||   |    || | |  ||     | |||                 
GAGATGGTCCCAAGCTTGTGAGGGAACTTTTCAGGGTTGCTGATGACCTTTCTCCTTCTATTGTTTTCATAGACGAGATTGATGCTGTTGGCACCAAGCGgtatgcctaaatac-aacataaac----atga----tccattgata-aacaatgtt-cttgattttgctcaagagatggtatctaatatgtgatataaaatggtggttgaaacag-----------------

upper sequence: GLYMA10G04920.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G29040.1 (Arabidopsis thaliana), 5'ss of exon 3
GAGATGGCCCAAAACTTGTGAGAGAACTTTTCAGAGTTGCCGATGATCTTTCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaacccccaactttagct--gtcatgaaggtaccggggatggaagagtgatgccttgtatcactctatgagctcttgggattcttttcctacattcatgagcttaccagtaaatatgtatttacag
||||||| || || |||||||||||||||||||||||||| ||||| ||||| || || || || ||||| ||||| || ||||| |||||||| ||  ||||| || |||      | | | |    ||   ||   |  |   ||||     ||||  ||||| |   |  | || |                                                      
GAGATGGTCCTAAGCTTGTGAGAGAACTTTTCAGAGTTGCTGATGACCTTTCACCATCAATCGTCTTCATAGATGAGATTGATGCTGTTGGTACCAAGCGgtaagttaaactattttcataaacctgatctataacccattgataatggttatctgattacttgt-tgtttgaaagaacag----------------------------------------------------

upper sequence: GLYMA10G04920.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0005g05160.t01 (Vitis vinifera), 5'ss of exon 3
GAGATGGCCCAAAACTTGTGAGAGAACTTTTCAGAGTTGCCGATGATCTTTCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaacccccaactttagctgtcatgaaggtaccggggatggaagagtgatgccttgtatcactctatga-gctcttgggattcttttcctacattcatgagcttaccagtaaatatgtatttacag
||||||| |||||| | ||||| ||  | || |||||||| |||||||| || ||||| ||||| |||||||||||||| ||||||||||||||||| |||| | |  |      ||| |||   || |||||    |      |  |||     |   || | | | | |   |   || | | |                                              
GAGATGGGCCAAAATTAGTGAGGGAGTTATTTAGAGTTGCTGATGATCTCTCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAGgtgagtcga----tgaacatta---gtgatgaaaaatcatatttttcaagttcttttttttttttaattatcaaatattccttgcag---------------------------------------------

upper sequence: GLYMA10G04920.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S4_277V6.1 (Physcomitrella patens), 5'ss of exon 3
GAGATGGCCCAAAACTTGTGAGAGAACTTTTCAGAGTTGCCGATGATCTTTCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaacccccaact--ttagctgtcatgaaggtaccggggatggaagagtgatgccttgtatcactctatgagctcttgggattcttttcctacattcatgagcttaccagtaaatatgtatttacag
||||||| || ||  | ||| |||| || ||  | || || ||||| || |||||| | ||||| || || |||||||| ||||| || ||||||||||||||||| |  ||  |  ||  |||  | |  |   |||       ||        ||| | |   | ||| || | |    |||  | |    || ||  |                                
GAGATGGACCGAAGTTGGTGCGAGAGCTATTTCGGGTGGCTGATGAACTGTCTCCTACCATTGTTTTTATCGATGAAATTGATGCTGTCGGTACAAAAAGgtaattctggcctgcttctcattatttttatttgcggtgtttctcataatgtttcgattcttgcaaccacactctcaagg-ttgccactgcactcttatct--------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12772670|gb|BG237524.1|BG237524
EST:     TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAG                         GTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
genomic: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
EST: gi|208266243|gb|GE065446.1|GE065446
EST:     TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAG                         GTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
genomic: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
EST: gi|192324369|gb|FK015720.1|FK015720
EST:     TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAATG                         -TATGATGCTCACTCAG-TGGAGAACGTGAGATTCAAAG-ACCATGTTAGA
genomic: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
EST: gi|207767339|gb|GD740647.1|GD740647
EST:     TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAG                         GTATGATGCTCACNCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
genomic: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
EST: gi|208176170|gb|GD974779.1|GD974779
EST:     TTCCTTCTTATTGTATTCATTGATGAAATCGATGCAGTCGGTACAAAAAG                         GTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
genomic: -TCCTTC-TATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
EST: gi|14991505|gb|BI317178.1|BI317178
EST:     TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTCCAAAAAG                         GTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
genomic: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
EST: gi|23057351|gb|BU578025.1|BU578025
EST:     TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAG                         GTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
genomic: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
EST: gi|13480000|gb|BG509343.1|BG509343
EST:     TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAG                         GTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
genomic: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
EST: gi|193356897|gb|FK319589.1|FK319589
EST:     TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAG                         GTATGATGCTCACTCAGGTGGAGAA
genomic: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAA
EST: gi|254313974|gb|GR831603.1|GR831603
EST:     TCT-CTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAG                         GTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
genomic: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
EST: gi|17400370|gb|BM177152.1|BM177152
EST:     TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGGTGGTACAAAAAG                         GTATGATGCTCAC
genomic: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCAC
EST: gi|207825707|gb|GD797334.1|GD797334
EST:     TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAG                         GTATGATGCTCACTCAGGTGGAGAA
genomic: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAA
EST: gi|207821859|gb|GD794298.1|GD794298
EST:     TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAG                         GTNTGATGCTCACTCAGGTGGAGAA
genomic: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAA
EST: gi|6454899|gb|AW185509.1|AW185509
EST:     TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAG                         GTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
genomic: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
EST: gi|254316119|gb|GR825928.1|GR825928
EST:     TGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAAG                         GTATGATGCTCACTCAGGTGGAGAACGGGAGATTCAAAGGACCATGTTAG
genomic: TGTATTCATTGATGAAATCGATGCAGTTGGTAC-AAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAG
EST: gi|24205871|gb|BU965124.1|BU965124
EST:     ATCGATGCAGTTGGTACAAAAAG                         GTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
genomic: ATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
EST: gi|22927270|gb|BU544409.1|BU544409
EST:     ATTCATTGATGAAATCGATGCAGTTGGTACAAAAAG                         GTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
genomic: ATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
EST: gi|254316118|gb|GR825927.1|GR825927
EST:     TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAG                         GTATGATGCTCACTCAGGTGGAGAACGGGAGATTCAAAGGACCATGTTAGA
genomic: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
EST: gi|208165264|gb|GD964428.1|GD964428
EST:     TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAG                         GTATGATGCTCACTCAGGTGGAGAA
genomic: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAA
EST: gi|298164759|gb|HO014404.1|HO014404
EST:     TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAG                         GTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
genomic: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
EST: gi|14011173|gb|BG726104.1|BG726104
EST:     TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAG                         GTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA
genomic: TCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGA