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AGTCAAATTTTAGCCGGCGGACGAGGTTTGGGAACTTTCAAAAGCGGCCTTAAGGGAGGAGTGCACATTGTTAAGACTGACCAGGTTGAAGACATAGCTGgtaatgcatgtctcctcctttattcctctaattgtgaatttccttcttctcattctatgtccttggttttcaatacaaaactatgtactatagcataaca...
species | Glycine max |
transcript | GLYMA10G04480.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TAAGGGAGGAGTGCGCATTGTTAAGACTGACCAGGTTGAAGACATAGCTG GGAAGATGCTTGGACAGATACTAGTEST: gi|298184950|gb|HO030163.1|HO030163
genomic: TAAGGGAGGAGTGCACATTGTTAAGACTGACCAGGTTGAAGACATAGCTGgtaatgcatg ... attatttcagGGAAGATGCTTGGACAGATACTAGT
EST: TAAGGGAGGAGTGCACATTGTTAAGACTGACCAGGTTGAAGACATAGCTG GGAAGATGCTTGGACAGATACTAGTTACCAAACAGACTGGTCCEST: gi|298176586|gb|HO023173.1|HO023173
genomic: TAAGGGAGGAGTGCACATTGTTAAGACTGACCAGGTTGAAGACATAGCTGgtaatgcatg ... attatttcagGGAAGATGCTTGGACAGATACTAGTTACCAAACAGACTGGTCC
EST: TAAGGGAGGAGTGCACATTGTTAAGACTGACCAGGTTGAAGACATAGCTG GGAAGATGCTTGGACAGATACTAGTTACCAAACAGACTGGTCCTCAGGGAAEST: gi|17518793|gb|BM187835.1|BM187835
genomic: TAAGGGAGGAGTGCACATTGTTAAGACTGACCAGGTTGAAGACATAGCTGgtaatgcatg ... attatttcagGGAAGATGCTTGGACAGATACTAGTTACCAAACAGACTGGTCCTCAGGGAA
EST: TTGAAGACATAGCTG GGAAGATGCTTGGACAGATACTAGTTACCAAACAGACTGGTCCTCAGGGAAEST: gi|61241640|gb|DN591031.1|DN591031
genomic: TTGAAGACATAGCTGgtaatgcatg ... attatttcagGGAAGATGCTTGGACAGATACTAGTTACCAAACAGACTGGTCCTCAGGGAA
EST: TAAGGGAGGAGTGCACATTGTTAAGACTGACCAGGTTGAAGACATAGCTG GGAAGATGCTTGGACAGATACTAGTTACCAAACAGACTGGTCCTCAGGGAAEST: gi|19347335|gb|BM892215.1|BM892215
genomic: TAAGGGAGGAGTGCACATTGTTAAGACTGACCAGGTTGAAGACATAGCTGgtaatgcatg ... attatttcagGGAAGATGCTTGGACAGATACTAGTTACCAAACAGACTGGTCCTCAGGGAA
EST: TAAGGGAGGAGTGCACATTGTTAAGACTGACCAGGTTGAAGACATAGCTG GGAAGATGCTTGGACAGATACTAGTTACCAAACAGACTGGTCCTCAGGGAAEST: gi|15000418|gb|BI321232.1|BI321232
genomic: TAAGGGAGGAGTGCACATTGTTAAGACTGACCAGGTTGAAGACATAGCTGgtaatgcatg ... attatttcagGGAAGATGCTTGGACAGATACTAGTTACCAAACAGACTGGTCCTCAGGGAA
EST: GGAGGAGTGCACATTGTTAAGACTGACCAGGTTGAAGACATAGCTG GGAAGATGCTTGGACAGATACTAGTTACCAAACAGACTGGTCCTCAGGGAAEST: gi|209712883|gb|BW679160.1|BW679160
genomic: GGAGGAGTGCACATTGTTAAGACTGACCAGGTTGAAGACATAGCTGgtaatgcatg ... attatttcagGGAAGATGCTTGGACAGATACTAGTTACCAAACAGACTGGTCCTCAGGGAA
EST: TAAGGGAGGAGTGCACATTGTTAAGACTGACCAGGTTGAAGACATAGCTG GGAAGATGCTTGGACAGATACTAGTTACCAAACAGACTGGTCCTCAGGGAAEST: gi|192308759|gb|FG999784.1|FG999784
genomic: TAAGGGAGGAGTGCACATTGTTAAGACTGACCAGGTTGAAGACATAGCTGgtaatgcatg ... attatttcagGGAAGATGCTTGGACAGATACTAGTTACCAAACAGACTGGTCCTCAGGGAA
EST: TAAGGGAGGAGTGCACATTGTTAAGACTGACCAGGTTGAAGACATAGCTG GGAAGATGCTTGGACAGATACTAGTTACCAAACAGACTGGTCCTCAGGGAAEST: gi|151397308|gb|EV267181.1|EV267181
genomic: TAAGGGAGGAGTGCACATTGTTAAGACTGACCAGGTTGAAGACATAGCTGgtaatgcatg ... attatttcagGGAAGATGCTTGGACAGATACTAGTTACCAAACAGACTGGTCCTCAGGGAA
EST: TAAGGGAGGAGTGCACATTGTTAAGACTGACCAGGTTGAAGACATAGCTG GGAAGATGCTTGGACAGATACTAGTTACCAAACAGACTGGTCCTCAGGGAAEST: gi|151409274|gb|EV279082.1|EV279082
genomic: TAAGGGAGGAGTGCACATTGTTAAGACTGACCAGGTTGAAGACATAGCTGgtaatgcatg ... attatttcagGGAAGATGCTTGGACAGATACTAGTTACCAAACAGACTGGTCCTCAGGGAA
EST: TAAGGGAGGAGTGCACATTGTTAAGACTGACCAGGTTGAAGACATAGCTG GGAAGATGCTTGGACAGATACTAGTTACCAAACAGACTGGTCCTCAGGGAA
genomic: TAAGGGAGGAGTGCACATTGTTAAGACTGACCAGGTTGAAGACATAGCTGgtaatgcatg ... attatttcagGGAAGATGCTTGGACAGATACTAGTTACCAAACAGACTGGTCCTCAGGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTCAAATTTTAGCCGGCGGACGAGGTTTGGGAACTTTCAAAAGCGGCCTTAAGGGAGGAGTGCACATTGTTAAGACTGACCAGGTTGAAGACATAGCTGgtaatgcatgtctcctcctttattcctctaattgtgaatttccttcttctcattctatgtccttggttttcaatacaaaactatgtactatagcataaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttcttc