Sequence
atgc intronic sequence ATGC exonic sequenceTTACATTGCCTTGGAGTTTGCTGGTATCTTTAATGGTTTGAAAAGCGAGGTTCATGTATTTATACGGCAAAAGAAGGTTTTGCGGGGATTTGATGAAGAGgtatgcaaccatggatgatacaaatattgcatttttacagcttaatgaactttcttcacattcaaattgtgaactatgtctgcag
Basic information
species | Glycine max |
transcript | GLYMA10G03740.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G03740.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os03g06740.1 (Oryza sativa), 5'ss of exon 3
TTACATTGCCTTGGAGTTTGCTGGTATCTTTAATGGTTTGAAAAGCGAGGTTCATGTATTTATACGGCAAAAGAAGGTTTTGCGGGGATTTGATGAAGAGgtatgcaaccatggatgatacaaatattgcatttttacagcttaatgaactttcttcac----attcaaattgtgaactatg--tctgcag
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ATATATTGCTCTGGAGTTTGCTGGAATTTTCAATGGCTTAAAAAGTGAGGTACATGTGTTTATTCGGCAGAAGAAAGTTTTAAGAGGGTTTGATGAAGAGgtgagcaaatattgggaacaacaaaatcatattcacagtagatgaagtgatctgttcactggagttatttttgtcggttgtggatttgcag
upper sequence: GLYMA10G03740.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G172322_T02 (Zea mays), 5'ss of exon 3
TTACATTGCCTTGGAGTTTGCTGGTATCTTTAATGGTTTGAAAAGCGAGGTTCATGTATTTATACGGCAAAAGAAGGTTTTGCGGGGATTTGATGAAGAGgtatgcaaccatggatgata-caaatattgcattt-ttacagcttaa-tgaactttcttcacattcaaattgtgaactatgtctgcag-------
|| ||||| |||||||||||||| || || ||||| || || || || || ||||| ||||| || || ||||| ||||| | ||||||||||||||||| ||| || | | | |||| || | || | |||| | || || | | | || | || || || | | |
GTATATTGCTTTGGAGTTTGCTGGCATTTTCAATGGCTTAAAGAGTGAAGTCCATGTGTTTATTCGTCAGAAGAAAGTTTTAAGAGGATTTGATGAAGAGgtgagcatatatttagaagatcaaagatatcgttaataacagataaactgtattgcttctgtgtttattttttgttctgcttttttaatgcacag
upper sequence: GLYMA10G03740.2 (Glycine max), 5'ss of exon 3
lower sequence: AT3G54660.1 (Arabidopsis thaliana), 5'ss of exon 3
TTACATTGCCTTGGAGTTTGCTGGTATCTTTAATGGTTTGAAAAGCGAGGTTCATGTATTTATACGGCAAAAGAAGGTTTTGCGGGGATTTGATGAAGAGgtatgcaacca-tggatgat-acaaatattgcatttttacagcttaatgaactttcttcacattcaaattgtgaactatgtctgcag
||||| ||| |||||||||| || ||||| |||||| | || | || ||||||||||||||| ||||||||||||| || |||||||||||||||| ||| | || | | || || || | ||| || | | | || | || | | ||| |||||| | ||| | |||
CTACATAGCCCTGGAGTTTGCGGGGATCTTCAATGGTCTTAACTGTGAAGTTCATGTATTTATAAGGCAAAAGAAGGTGCTGAGGGGATTTGATGAAGATgtaagtaaaaaattgagaatgacttttgctgctttcatttatccgtctggatattttcta-attgtaattgttattcttgttt-cag
upper sequence: GLYMA10G03740.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0141g00390.t01 (Vitis vinifera), 5'ss of exon 3
TTACATTGCCTTGGAGTTTGCTGGTATCTTTAATGGTTTGAAAAGCGAGGTTCATGTATTTATACGGCAAAAGAAGGTTTTGCGGGGATTTGATGAAGAGgtatgcaaccatggatgatacaaatattgcatttttacagcttaatgaactttcttcacattcaaattgtgaa--ctatgtctgcag---------
|||||||| |||||||||||||||||||| ||||||||||| | || || ||||||||||||||||| || |||||||| | || ||||||||||| ||| | ||| |||||| | | | || || | || | || | || | | |||| || | | | ||
GTACATTGCTTTGGAGTTTGCTGGTATCTTCAATGGTTTGAATACTGACGTCCATGTATTTATACGGCAGAAAAAGGTTTTAAGAGGTTTTGATGAAGATgtaaggaactgcatatgatattattgattttttattttatttttcctatctacatgtgcaat-agtttgtcaaacttgcattttcaatgccttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6482472|gb|AW201729.1|AW201729EST: TTCATGTATTTATACGGCAAAAGAAGGTTTTGCGGCGATTTGATGAAGAG ATTAGAGATTTTGTTTCAGAACAAATGTCTGTAAGAGGTATTGAATTCCAT
genomic: TTCATGTATTTATACGGCAAAAGAAGGTTTTGCGGGGATTTGATGAAGAGgtatgcaacc ... atgtctgcagATTAGAGATTTTGTTTCAGAACAAATGTCTGTAAGAGGTATTGAATTCCAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTACATTGCCTTGGAGTTTGCTGGTATCTTTAATGGTTTGAAAAGCGAGGTTCATGTATTTATACGGCAAAAGAAGGTTTTGCGGGGATTTGATGAAGAGgtatgcaaccatggatgatacaaatattgcatttttacagcttaatgaactttcttcacattcaaattgtgaactatgtctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA